Generate QC report: Sylvain

[tashrifbillah]

Sylvain asked for all the matrices together in a QC report:

CC computation takes 30 seconds on radius 10:
The higher CC, the better registration.

MeasureImageSimilarity -d 3 -m CC[/home/tb571/Documents/TBSS/data/enigmaDTI/ENIGMA_DTI_FA.nii.gz,/home/tb571/Documents/TBSS/lib/tests/enigmaTemplateOutput/FA/warped/dti_tra_dir16_AP_9_134431_FA_to_target.nii.gz,1,10]

MSE computation is almost instantaneous:
The lower MSE, the better registration.
MeasureImageSimilarity -d 3 -m MeanSquares[/home/tb571/Documents/TBSS/data/enigmaDTI/ENIGMA_DTI_FA.nii.gz,/home/tb571/Documents/TBSS/lib/tests/enigmaTemplateOutput/FA/warped/dti_tra_dir16_AP_9_134431_FA_to_target.nii.gz,1

MI computation is also almost instantaneous:
The lower MI, the better registration.
MeasureImageSimilarity -d 3 -m MI[/home/tb571/Documents/TBSS/data/enigmaDTI/ENIGMA_DTI_FA.nii.gz,/home/tb571/Documents/TBSS/lib/tests/enigmaTemplateOutput/FA/warped/dti_tra_dir16_AP_9_134431_FA_to_target.nii.gz,1,256]

Tashrif is worried about the time taken for CC.