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simplify atlas.py usage to include a predefined -t1 or -t2 option #45

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tashrifbillah opened this issue Nov 4, 2019 · 2 comments
Open

simplify atlas.py usage to include a predefined -t1 or -t2 option #45

tashrifbillah opened this issue Nov 4, 2019 · 2 comments
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backlog enhancement New feature or request

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@tashrifbillah
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Right now, the user has to provide a list of templates (in csv or args), and setting up the csv from our own training is a little convoluted.

Since we have our training set, maybe we can add a -t1 / -t2 option so that the command looks like:
atlas.py -t1 -t t1w.nii.gz -o t1w-mask

cc: @sbouix
@tashrifbillah tashrifbillah self-assigned this Nov 4, 2019
@tashrifbillah tashrifbillah added the enhancement New feature or request label Nov 4, 2019
@tashrifbillah
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Simplified in pnlNipype

pnlbwh/pnlNipype@02e471f

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Labeled Backlog for pnlpipe.

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