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DESCRIPTION
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DESCRIPTION
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Package: Epi-Impute
Version: 4.2.1
Date: 2022-11-02
Title: Epi-Impute
Description: Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
Authors@R: c(
person(given = "Mikhail", family = "Raevskiy", role = "ctb"),
)
URL: https://github.com/raevskymichail/epi-impute/
BugReports: https://github.com/raevskymichail/epi-impute/issues
Depends: R (>= 4.0.0), methods
Imports: cluster, fitdistrplus, future, future.apply, ggplot2
(>= 3.3.0), ggrepel, ggridges, graphics, grDevices, grid, httr,
ica, igraph, irlba, jsonlite, KernSmooth, leiden (>= 0.3.1),
lmtest, Matrix (>= 1.5-0), matrixStats,
patchwork, pbapply, plotly (>= 4.9.0), png, RANN, RColorBrewer,
Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), reticulate, rlang,
ROCR, scales, scattermore (>= 0.7), spatstat.explore,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.14)
LinkingTo: Rcpp (>= 0.11.0), RcppEigen, RcppProgress
License: Apache 2.0 + file LICENSE
LazyData: true
Collate: 'RcppExports.R' 'reexports.R' 'generics.R' 'clustering.R'
'visualization.R' 'convenience.R' 'data.R'
'differential_expression.R'
'integration.R' 'mixscape.R' 'objects.R' 'preprocessing.R'
'tree.R' 'utilities.R'
RoxygenNote: 7.2.1
Encoding: UTF-8
Suggests: ape, rsvd, testthat, hdf5r, S4Vectors, SummarizedExperiment,
DESeq2, BiocGenerics, rtracklayer, Rfast2, Biobase, metap,
enrichR, mixtools, ggrastr
NeedsCompilation: yes
Packaged: 2022-11-02 21:31:02 UTC; hartmana
Author: Mikhail Raevskiy [ctb] (<https://orcid.org/0000-0003-3608-0463>)
Maintainer: Mikhail Raevskiy <[email protected]>
Repository: CRAN
Date/Publication: 2022-11-02 00:00:02 UTC