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Filling in empty slices #53

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junxiant opened this issue Jul 17, 2023 · 0 comments
Open

Filling in empty slices #53

junxiant opened this issue Jul 17, 2023 · 0 comments

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@junxiant
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Hello,
I am converting a DICOM Seg file, which contains no empty slices (No mask annotations). After I have converted it into nifti format, I got a segmentation mask which works exactly, except the missing slices are not included.

Is there a way to include these empty slices with reference to the original DICOM scan?

Or will i need to

  1. Write these SEG into dicom files
  2. Match these SEG's referenced_instance_uid to the original scan's SOPInstanceUID, and create empty slices in between?
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