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fix virsorter filtering when there are no class 1,2,3,4 detections #434

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fix virsorter filtering when there are no class 1,2,3,4 detections

fix virsorter filtering when there are no class 1,2,3,4 detections #434

Workflow file for this run

.github/workflows/nextflow-test.yml at b04bfa4
name: Syntax_check
on: [push]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v1
- name: Help_test
run: curl -s https://get.nextflow.io | bash && ./nextflow run phage.nf --help
- name: fasta dry run whole wf
run: |
./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2
- name: fasta dry run identify only
run: |
./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --identify
- name: fasta dry run annotate only
run: |
./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --annotate
- name: fasta dry run remove some tools 1
run: |
./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --dv --mp --pp --sm --vb
- name: fasta dry run remove some tools 2
run: |
./nextflow run phage.nf --fasta ./test-data/stub_genome.fasta -stub -profile stub --cores 2 --max_cores 2 --vf --vn --vs --ph --vs2 --sk