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Partition phage and eukaryotic viruses #57

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shandley opened this issue Jan 5, 2022 · 1 comment
Open

Partition phage and eukaryotic viruses #57

shandley opened this issue Jan 5, 2022 · 1 comment
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enhancement New feature or request

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@shandley
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shandley commented Jan 5, 2022

In an early developmental version of hecatomb I merged the 'bigtable' (wasn't called that at the time!) to a list of phage taxonomies. This added a column called virus_type that allowed for simple partitioning go phage-to-nonphage viruses.

This should be easy to implement the same way we add Baltimore classifications.

I have the original phage list that I used for this (below).
Ampullaviridae
Atkinsviridae
Autographiviridae
Autolykiviridae
Bicaudaviridae
Blumeviridae
Caudovirales
Caudovirales_undefined_family
Clavaviridae
Corticoviridae
Crevaviridae
Cystoviridae
Duinviridae
Fiersviridae
Fuselloviridae
Globuloviridae
Guelinviridae
Guttaviridae
Inoviridae
Intestiviridae
Jelitoviridae
Leviviridae
Ligamenvirales
Ligamenvirales_undefined_family
Lipothrixviridae
Matshushitaviridae
Microviridae
Myoviridae
Paulinoviridae
Picobirnaviridae
Plasmaviridae
Pleolipoviridae
Podoviridae
Portogloboviridae
Rountreeviridae
Rudiviridae
Salasmaviridae
Schitoviridae
Simuloviridae
Siphoviridae
Solspiviridae
Sphaerolipoviridae
Spiraviridae
Steigviridae
Steitzviridae
Suoliviridae
Tectiviridae
Tinaiviridae
Tristromaviridae
Tubulavirales
Tubulavirales_undefined_family
Turriviridae
unidentified phage
Zobellviridae

@shandley shandley added the enhancement New feature or request label Jan 5, 2022
@beardymcjohnface
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Do we need an expanded list for all the taxonkit outputs like "unclassified caudovirales family"?

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