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taxonomy improvement #67
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It's a tab-separated file so spaces shouldn't be a problem. How were you planning on parsing the files? |
I was trying to make a helper script to pull reads from a family of interest, so a shell script but could do it differently. |
If you're using awk, you'll just need to pass |
Hi Mike, I just created an updated taxonomy database with Baltimore classification, which I am having trouble uploading here. This is the latest ICTV release. I will email it to you and Rob. |
Hi Mike,
In working with the SIV data, I realized that there are spaces in taxonomic fields. For example, for families:
Verrucomicrobia subdivision 3
Verrucomicrobia subdivision 6
This will make pulling reads by family more difficult. Could all spaces in taxonomy fields be replaced with underscores in the next update?
Thank you,
Kathie
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