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Error when attempting to merge Seurat Objects after filtering #59
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I just encountered an open issue in Seurat which could be related: satijalab/seurat#6462 |
Hello William, would you like to tackle this issue? |
Hi Stefano, Sure, I will investigate. |
Hello all I was looking to report a similar bug with a different error, but also in the merge function in tidyseurat. I have two Seurat-tibble abstraction objects that were both processed. But one was processed and saved as an .rds and re-loaded and other processed at the moment
Second
And when I try a merge:
sessionInfo():
During the tidyomics class I ministered I had a more controlled environment and this error did not appear when I was merging with these environment sessionInfo and processing all the data at the same time:
Let me know if I can provide more info! |
Hello,
I am encountering an error when trying to merge two Seurat Objects after using tidyseurat's filter(). The error can only be produced when the attached data's "integrated" assay is present.
The error is produced by calling merge() with the following code:
The error message is:
The pbmc_complex_filtered_split object looks like:
Merging with the same data works fine without filtering:
And merging after filtering works fine when the "integrated" assay is removed:
sessionInfo():
I have attached the data used to produce this error.
Let me know if I can provide any more information. Thank you!
pbmc_complex.rds.zip
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