A PyBEL extension for Jupyter notebooks
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Updated
Apr 16, 2020 - Python
Biological Expression Language is a domain-specific language created by Dexter Pratt at Selventa for encoding qualitative causal, correlative, and associative relations between entities in biological knowledge graphs.
A PyBEL extension for Jupyter notebooks
A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL
A Bio2BEL package for mir2disease (http://www.mir2disease.org)
LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
A Bio2BEL package for converting the Comparative Toxicogenomics Database (CTD) to BEL
A Bio2BEL package for converting ExPASy to BEL
A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
LaTeX source for "BEL2ABM: agent-based simulation of static models in Biological Expression Language"
Curated and automatically generated BEL resources
A Bio2BEL package for converting Entrez and HomoloGene to BEL
A Bio2BEL package for converting BMKS-react to BEL
Convert curated assays from ExCAPE-DB to BEL
Mechanistic pathway knowledge on Epilepsy encoded in Biological Expression Language
An environment for curating, validating, and exploring knowledge assemblies encoded in BEL
Disease-disease relationships from Menche et al.
A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL
A Bio2BEL package for miRBase (http://www.mirbase.org)
Convert differential gene expression signatures for diseases from ADEPTUS to BEL
awk library and functions for pacbiohifi read analysis.
A Bio2BEL package for converting biochemical inhibition and binding information in ChEMBL to BEL
Created by Dexter Pratt
Released 2012