This repository contains all machine learning and statistical models used to analyze the landscape of colorectal cancer.
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Updated
Jan 22, 2021 - R
This repository contains all machine learning and statistical models used to analyze the landscape of colorectal cancer.
UNSUPERVISED MACHINE LEARNING (CLUSTERING): TCGA data mining for studying the system of interactions between sub-branches of Wnt signalling pathway in colorectal cancer
Colorectal Disease Classification Using ResNet and ResNeXt
Prediction of colorectal cancer (CRC) phenotype based on Microbiome Metagenomics
Transfer learning & fine-tuning in Tensorflow for classification of textures in colorectal cancer histology
The goal of this analysis is to explore the machine learning-based automatic diagnosis of colorectal patients based on the single nucleotide polymorphisms (SNP). Such a computational approach may be used complementary to other diagnosis tools, such as, biopsy, CT scan, and MRI. Moreover, it may be used as a low-cost screening for colorectal cancers
Noise Robust Learning with Hard Example Aware for Pathological Image classification
DL-model for multi-class tissue segmentation in colorectal cancer H&E slides, developed as part of the SemiCOL2023 Challenge.
Diagnosing colorectal cancer from histopathology images using deep learning: final project code.
Official Implementation of our paper "Supervision meets Self-Supervision: A Deep Multitask Network for Colorectal Cancer Histopathological Analysis" [Best Paper Award at MISP 2022]
Based on our paper "SnapEnsemFS: A Snapshot Ensembling-based Deep Feature Selection Model for Colorectal Cancer Histological Analysis" published in Scientific Reports, Nature (2023).
Combining epigenetic modeling with machine learning for colorectal cancer detection
Determines if a given Colorectal tissue image is cancerous or healthy using methods from Topology for the input embedding (TDA).
A multi-centre polyp detection and segmentation dataset for generalisability assessment https://www.nature.com/articles/s41597-023-01981-y
GastroVision: A Multi-class Endoscopy Image Dataset for Computer Aided Gastrointestinal Disease Detection https://drive.google.com/drive/folders/1T35gqO7jIKNxC-gVA2YVOMdsL7PSqeAa?usp=sharing
Colorectal cancer risk mapping through Bayesian Networks
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