Performing RNA-seq data analysis with DESeq2 package of bioconductor
-
Updated
Feb 27, 2023 - R
Performing RNA-seq data analysis with DESeq2 package of bioconductor
DESeq2 Analysis of Human Airway Smooth Muscle Cells
Automated DE analysis by DESeq2
RNA-seq replication analysis.
Jupyter notebooks for DGE results and ontology analysis and visualisation.
Repository containing code I have written in R.
Basic script for RNA-seq analysis with DESeq2
Differential Gene Expression (DGE) Analysis with DESeq2 using a reference genome
Neste projeto descrevo diferentes parâmetros e opções para a execução de programas necessários à análise de Rna-Seq, além de incluir informações e opniões que possam facilitar a escolha da melhor opção que se adque à análise em questão.
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
Part of the final project for an Intro to Bioinformatics graduate course. Using RStudio I ran DESeq2 to show differentially expressed genes between control mice and mice infected with RSV.
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Differential Gene Expression analysis in R using DESeq2
Bioinformatic differential expression analyses pipeline to investigate biomarkers in Parkinson disease.
Ferroptosis and antioxidant effect on stem cells
Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster
Bulk Rna-seq Analysis
DESeq2 Analysis and visualization of specific genes, notably Pasilla. Script aims to identify and filter differentially expressed genes and neatly store the results. The project also includes Gene Ontology (GO) and Kegg pathway analyses, providing insights into the biological processes affected by the Pasilla gene depletion.
Add a description, image, and links to the deseq2-analysis topic page so that developers can more easily learn about it.
To associate your repository with the deseq2-analysis topic, visit your repo's landing page and select "manage topics."