Scripts and parameters for generating/analyzing fastSimcoal2 simulations, as part of the IMLS_GCCO project comparing ex situ conservation measures between SNP and microsatellite marker types
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Updated
Jul 2, 2024 - R
Scripts and parameters for generating/analyzing fastSimcoal2 simulations, as part of the IMLS_GCCO project comparing ex situ conservation measures between SNP and microsatellite marker types
This is a bunch of programs I created in the 2020 Intermediate Coding For Medicine Course. No Stealing.
R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
This repository contains the python package for Helical
Rust library for compressing and decompressing DNA sequences
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
The catGenes package is intended to help researchers in phylogenetics and phylogenomics to build a fully concatenated or combined (non-interleaved) dataset by automatically comparing individual DNA alignments.
Generation and visualization of 3d protein sequences
dna protein prediction using transformer. second version of engima-1.5b
a dna sequence generation/classification using transformers
Program takes in a string of DNA, and converts it to a protein chain.
genomic alignment similarity search tool
Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the …
Easy to use and modify implementation of Smith-Waterman Algorithm.
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
This project provides the classification of DNA sequences for Breast cancer prediction which into promoter regions associated. Using machine learning and deep learning techniques, I analyze and try to predict sequence data for negative and positive answers in cancer prediction.
Welcome to my Python Projects Repository, Explore a diverse collection of Python scripts, from simple puzzles to complex problems. Browse, contribute, and enhance your Python skills!
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