R package for random-effect multiple QTL mapping in autopolyploids
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Updated
Mar 20, 2024 - R
R package for random-effect multiple QTL mapping in autopolyploids
DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
See https://biometris.github.io/statgenMPP for a full description
Pipeline for polymap and QTL Mapping
MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets
In-silico methods for finemapping of genetic regions in inbred mice
Scripts of Final Master Project
Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
Repository for genomic webapplications served from GitHub pages
To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker analysis to interval mapping.
Jackson Labs Summer Student Program 2018, Bar Harbor, ME. Statistically analyzing the effect of genetic diversity on the aging heart. Final paper: https://docs.google.com/document/d/1rkDRjnS6XhkFGk6EpzB4V24XqJdfN_JaM4vh5cc3iBA/edit
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