From fae0b676d78b25e637e086122d060c3b962b1772 Mon Sep 17 00:00:00 2001
From: Mingfei Shao <2475897+mfshao@users.noreply.github.com>
Date: Fri, 1 Mar 2024 15:46:10 -0600
Subject: [PATCH] Fix/revert (#2493)

* Revert "fix missed import (#2491)"

This reverts commit bd6bc767c0461f8fc1f1d90fa8a755be1e7fc381.

* Revert "Update heal-cedar-data-ingest.py (#2490)"

This reverts commit 90b66091c0d1d8b89e7182ad84201e99903d8e44.

* Revert "updating the cedar data ingest (#2472)"

This reverts commit 6c27fc9a7fe6cd3affd7a108db3c80b51c664ad1.
---
 .secrets.baseline                             | 346 ++++++++++++++----
 .../healdata/heal-cedar-data-ingest.py        |  98 +----
 2 files changed, 275 insertions(+), 169 deletions(-)

diff --git a/.secrets.baseline b/.secrets.baseline
index 2583e269f8..b7e06622d6 100644
--- a/.secrets.baseline
+++ b/.secrets.baseline
@@ -1,9 +1,9 @@
 {
   "exclude": {
-    "files": null,
+    "files": "^.secrets.baseline$",
     "lines": null
   },
-  "generated_at": "2024-02-29T19:38:46Z",
+  "generated_at": "2024-02-23T20:30:41Z"
   "plugins_used": [
     {
       "name": "AWSKeyDetector"
@@ -61,12 +61,14 @@
     "Chef/repo/data_bags/README.md": [
       {
         "hashed_secret": "8a9250639e092d90f164792e35073a9395bff366",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 45,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "6367c48dd193d56ea7b0baad25b19455e529f5ee",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 51,
         "type": "Secret Keyword"
@@ -75,22 +77,25 @@
     "Docker/jenkins/Jenkins-CI-Worker/Dockerfile": [
       {
         "hashed_secret": "10daf3a26c6a17242a5ab2438a12ebc8276c7603",
+        "is_secret": false,
         "is_verified": false,
-        "line_number": 124,
+        "line_number": 121,
         "type": "Secret Keyword"
       }
     ],
     "Docker/jenkins/Jenkins-Worker/Dockerfile": [
       {
         "hashed_secret": "10daf3a26c6a17242a5ab2438a12ebc8276c7603",
+        "is_secret": false,
         "is_verified": false,
-        "line_number": 139,
+        "line_number": 143,
         "type": "Secret Keyword"
       }
     ],
     "Docker/jenkins/Jenkins/Dockerfile": [
       {
         "hashed_secret": "10daf3a26c6a17242a5ab2438a12ebc8276c7603",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 107,
         "type": "Secret Keyword"
@@ -99,6 +104,7 @@
     "Docker/jenkins/Jenkins2/Dockerfile": [
       {
         "hashed_secret": "10daf3a26c6a17242a5ab2438a12ebc8276c7603",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 108,
         "type": "Secret Keyword"
@@ -107,6 +113,7 @@
     "Docker/sidecar/service.key": [
       {
         "hashed_secret": "1348b145fa1a555461c1b790a2f66614781091e9",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 1,
         "type": "Private Key"
@@ -115,6 +122,7 @@
     "Jenkins/Stacks/Jenkins/jenkins.env.sample": [
       {
         "hashed_secret": "eecee33686ac5861c2a7edc8b46bd0e5432bfddd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 5,
         "type": "Secret Keyword"
@@ -123,6 +131,7 @@
     "ansible/roles/awslogs/defaults/main.yaml": [
       {
         "hashed_secret": "9d4e1e23bd5b727046a9e3b4b7db57bd8d6ee684",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 30,
         "type": "Basic Auth Credentials"
@@ -131,12 +140,14 @@
     "ansible/roles/slurm/README.md": [
       {
         "hashed_secret": "4acfde1ff9c353ba2ef0dbe0df73bda2743cba42",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 86,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "579649582303921502d9e6d3f8755f13fdd2b476",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 86,
         "type": "Secret Keyword"
@@ -145,6 +156,7 @@
     "apis_configs/config_helper.py": [
       {
         "hashed_secret": "bf21a9e8fbc5a3846fb05b4fa0859e0917b2202f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 66,
         "type": "Basic Auth Credentials"
@@ -153,6 +165,7 @@
     "apis_configs/fence_credentials.json": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 23,
         "type": "Secret Keyword"
@@ -161,18 +174,21 @@
     "apis_configs/fence_settings.py": [
       {
         "hashed_secret": "3ef0fb8a603abdc0b6caac44a23fdc6792f77ddf",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 6,
         "type": "Basic Auth Credentials"
       },
       {
         "hashed_secret": "b60d121b438a380c343d5ec3c2037564b82ffef3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 58,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "347cd9c53ff77d41a7b22aa56c7b4efaf54658e3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 80,
         "type": "Basic Auth Credentials"
@@ -181,6 +197,7 @@
     "apis_configs/indexd_settings.py": [
       {
         "hashed_secret": "0a0d18c85e096611b5685b62bc60ec534d19bacc",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 59,
         "type": "Basic Auth Credentials"
@@ -189,6 +206,7 @@
     "apis_configs/peregrine_settings.py": [
       {
         "hashed_secret": "347cd9c53ff77d41a7b22aa56c7b4efaf54658e3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 46,
         "type": "Basic Auth Credentials"
@@ -197,6 +215,7 @@
     "apis_configs/sheepdog_settings.py": [
       {
         "hashed_secret": "347cd9c53ff77d41a7b22aa56c7b4efaf54658e3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 46,
         "type": "Basic Auth Credentials"
@@ -205,6 +224,7 @@
     "doc/Gen3-data-upload.md": [
       {
         "hashed_secret": "b8bd20d4a2701dc3aba0efbbf325f1359392d93e",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 26,
         "type": "Secret Keyword"
@@ -213,6 +233,7 @@
     "doc/api.md": [
       {
         "hashed_secret": "625de83a7517422051911680cc803921ff99db90",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 47,
         "type": "Hex High Entropy String"
@@ -221,24 +242,28 @@
     "doc/gen3OnK8s.md": [
       {
         "hashed_secret": "2db6d21d365f544f7ca3bcfb443ac96898a7a069",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 113,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "ff9ee043d85595eb255c05dfe32ece02a53efbb2",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 143,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "70374248fd7129088fef42b8f568443f6dce3a48",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 170,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "bcf22dfc6fb76b7366b1f1675baf2332a0e6a7ce",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 189,
         "type": "Secret Keyword"
@@ -247,6 +272,7 @@
     "doc/kube-setup-data-ingestion-job.md": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 30,
         "type": "Secret Keyword"
@@ -255,6 +281,7 @@
     "doc/logs.md": [
       {
         "hashed_secret": "9addbf544119efa4a64223b649750a510f0d463f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 6,
         "type": "Secret Keyword"
@@ -263,6 +290,7 @@
     "doc/slurm_cluster.md": [
       {
         "hashed_secret": "2ace62c1befa19e3ea37dd52be9f6d508c5163e6",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 184,
         "type": "Secret Keyword"
@@ -271,12 +299,14 @@
     "files/dashboard/usage-reports/package-lock.json": [
       {
         "hashed_secret": "e095101882f706c4de95e0f75c5bcb9666e3f448",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 10,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "5422e4f96964d5739998b25ac214520c1b113e5b",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 15,
         "type": "Base64 High Entropy String"
@@ -285,12 +315,14 @@
     "gen3/bin/api.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 407,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "e7064f0b80f61dbc65915311032d27baa569ae2a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 477,
         "type": "Secret Keyword"
@@ -299,6 +331,7 @@
     "gen3/bin/kube-dev-namespace.sh": [
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 135,
         "type": "Secret Keyword"
@@ -307,6 +340,7 @@
     "gen3/bin/kube-setup-argo.sh": [
       {
         "hashed_secret": "40304f287a52d99fdbe086ad19dbdbf9cc1b3897",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 206,
         "type": "Secret Keyword"
@@ -315,6 +349,7 @@
     "gen3/bin/kube-setup-aurora-monitoring.sh": [
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 59,
         "type": "Secret Keyword"
@@ -323,6 +358,7 @@
     "gen3/bin/kube-setup-certs.sh": [
       {
         "hashed_secret": "2e9ee120fd25e31048598693aca91d5473898a99",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 50,
         "type": "Secret Keyword"
@@ -331,12 +367,14 @@
     "gen3/bin/kube-setup-dashboard.sh": [
       {
         "hashed_secret": "40304f287a52d99fdbe086ad19dbdbf9cc1b3897",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 40,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "e7064f0b80f61dbc65915311032d27baa569ae2a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 41,
         "type": "Secret Keyword"
@@ -345,12 +383,14 @@
     "gen3/bin/kube-setup-data-ingestion-job.sh": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 37,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "8695a632956b1b0ea7b66993dcc98732da39148c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 102,
         "type": "Secret Keyword"
@@ -359,6 +399,7 @@
     "gen3/bin/kube-setup-dicom-server.sh": [
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 43,
         "type": "Secret Keyword"
@@ -367,6 +408,7 @@
     "gen3/bin/kube-setup-dicom.sh": [
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 78,
         "type": "Secret Keyword"
@@ -375,26 +417,14 @@
     "gen3/bin/kube-setup-jenkins.sh": [
       {
         "hashed_secret": "05ea760643a5c0a9bacb3544dc844ac79938a51f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 18,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
-        "is_verified": false,
-        "line_number": 22,
-        "type": "Secret Keyword"
-      }
-    ],
-    "gen3/bin/kube-setup-jenkins2.sh": [
-      {
-        "hashed_secret": "05ea760643a5c0a9bacb3544dc844ac79938a51f",
-        "is_verified": false,
-        "line_number": 18,
-        "type": "Secret Keyword"
-      },
-      {
-        "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 22,
         "type": "Secret Keyword"
@@ -403,6 +433,7 @@
     "gen3/bin/kube-setup-metadata.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 35,
         "type": "Secret Keyword"
@@ -411,18 +442,21 @@
     "gen3/bin/kube-setup-revproxy.sh": [
       {
         "hashed_secret": "40304f287a52d99fdbe086ad19dbdbf9cc1b3897",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 38,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 55,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 57,
         "type": "Secret Keyword"
@@ -431,18 +465,21 @@
     "gen3/bin/kube-setup-secrets.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 79,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 82,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "6f7531b95bbc99ac25a5cc82edb825f319c5dee8",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 95,
         "type": "Secret Keyword"
@@ -451,12 +488,14 @@
     "gen3/bin/kube-setup-sftp.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 36,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "83d11e3aec005a3b9a2077c6800683e202a95af4",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 51,
         "type": "Secret Keyword"
@@ -465,6 +504,7 @@
     "gen3/bin/kube-setup-sheepdog.sh": [
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 33,
         "type": "Secret Keyword"
@@ -473,24 +513,28 @@
     "gen3/bin/kube-setup-sower-jobs.sh": [
       {
         "hashed_secret": "40304f287a52d99fdbe086ad19dbdbf9cc1b3897",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 25,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "e7064f0b80f61dbc65915311032d27baa569ae2a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 26,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 120,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 122,
         "type": "Secret Keyword"
@@ -499,18 +543,21 @@
     "gen3/bin/kube-setup-ssjdispatcher.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 117,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "7992309146efaa8da936e34b0bd33242cd0e9f93",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 184,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 197,
         "type": "Secret Keyword"
@@ -519,12 +566,14 @@
     "gen3/lib/aws.sh": [
       {
         "hashed_secret": "8db3b325254b6389ca194d829d2fc923dc0a945d",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 640,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "5b4b6c62d3d99d202f095c38c664eded8f640ce8",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 660,
         "type": "Secret Keyword"
@@ -533,12 +582,14 @@
     "gen3/lib/bootstrap/templates/Gen3Secrets/apis_configs/fence-config.yaml": [
       {
         "hashed_secret": "a94a8fe5ccb19ba61c4c0873d391e987982fbbd3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 33,
         "type": "Basic Auth Credentials"
       },
       {
         "hashed_secret": "5d07e1b80e448a213b392049888111e1779a52db",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 286,
         "type": "Secret Keyword"
@@ -547,6 +598,7 @@
     "gen3/lib/bootstrap/templates/Gen3Secrets/creds.json": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 26,
         "type": "Secret Keyword"
@@ -555,6 +607,7 @@
     "gen3/lib/bootstrap/templates/Gen3Secrets/g3auto/dbfarm/servers.json": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 5,
         "type": "Secret Keyword"
@@ -563,6 +616,7 @@
     "gen3/lib/logs/utils.sh": [
       {
         "hashed_secret": "76143b4ffc8aa2a53f9700ce229f904e69f1e8b5",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 3,
         "type": "Secret Keyword"
@@ -571,6 +625,7 @@
     "gen3/lib/manifestDefaults/hatchery/hatchery.json": [
       {
         "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 78,
         "type": "Secret Keyword"
@@ -579,12 +634,14 @@
     "gen3/lib/onprem.sh": [
       {
         "hashed_secret": "29e52a9bac8f274fa41c51fce9c98eba0dd99cb3",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 68,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "50f013532a9770a2c2cfdc38b7581dd01df69b70",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 84,
         "type": "Secret Keyword"
@@ -593,12 +650,14 @@
     "gen3/lib/secrets/rotate-postgres.sh": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 162,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d3df8a3b08a9de43b73eca1302d50e7a0e5b360f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 250,
         "type": "Secret Keyword"
@@ -607,42 +666,49 @@
     "gen3/lib/testData/etlconvert/expected2.yaml": [
       {
         "hashed_secret": "fe54e5e937d642307ec155b47ac8a214cb40d474",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 10,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "cea0e701e53c42bede2212b22f58f9ff8324da55",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 13,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "d98d72830f08c9a8b96ed11d3d96ae9e71b72a26",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 16,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "667fd45d415f73f4132cf0ed11452beb51117b12",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 18,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "c2599d515ba3be74ed58821485ba769fc565e424",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 33,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "6ec5eb29e2884f0c9731493b38902e37c2d672ba",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 35,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "99126b74731670a59b663d5320712564ec7b5f22",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 36,
         "type": "Base64 High Entropy String"
@@ -651,6 +717,7 @@
     "gen3/test/secretsTest.sh": [
       {
         "hashed_secret": "c2c715092ef59cba22520f109f041efca84b8938",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 25,
         "type": "Secret Keyword"
@@ -659,24 +726,28 @@
     "gen3/test/terraformTest.sh": [
       {
         "hashed_secret": "8db3b325254b6389ca194d829d2fc923dc0a945d",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 156,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "1cc07dccfdf640eb0e403e490a873a5536759009",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 172,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "185a71a740ef6b9b21c84e6eaa47b89c7de181ef",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 175,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "329b7cd8191942bedd337107934d365c43a86e6c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 175,
         "type": "Secret Keyword"
@@ -685,18 +756,21 @@
     "kube/services/argocd/values.yaml": [
       {
         "hashed_secret": "27c6929aef41ae2bcadac15ca6abcaff72cda9cd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 360,
         "type": "Private Key"
       },
       {
         "hashed_secret": "edbd5e119f94badb9f99a67ac6ff4c7a5204ad61",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 379,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "91dfd9ddb4198affc5c194cd8ce6d338fde470e2",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 412,
         "type": "Secret Keyword"
@@ -705,6 +779,7 @@
     "kube/services/datadog/values.yaml": [
       {
         "hashed_secret": "4a8ce7ae6a8a7f2624e232b61b18c2ac9789c44b",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 23,
         "type": "Secret Keyword"
@@ -713,362 +788,401 @@
     "kube/services/fenceshib/fenceshib-configmap.yaml": [
       {
         "hashed_secret": "a985e14b9d6744a2d04f29347693b55c116e478c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 375,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "adc747bc5eb82ef4b017f5c3759dcee5aa28c36f",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 376,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "59b1702ff0eaf92c9271cbd12f587de97df7e13b",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 377,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "b4a748bbfbbca8925d932a47ab3dcb970d34caf5",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 378,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "af646701a84f7dd9f0e87753f54def881326e78a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 379,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "20c15ad9742124dc06e1612282c49bb443ebcbd9",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 380,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "9caded71b967a11b7a6cd0f20db91f06f3517d12",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 381,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "8f19501bc9241b71f7b6db929fb35ab12635dcd7",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 382,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "d6220f6a55df1ed11c4250f42ab07bb9da20541a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 383,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "dadd9b96636f9529f2547d05d754dc310ceba0c3",
+        "is_secret": false,
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         "line_number": 384,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "3074bc66584550e20c3697a28f67a0762394943c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 385,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "823131319b4c4b4688f44d3e832bfa9696f16b52",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 386,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "015b780cbfb76988caf52de8ac974a6781e53110",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "5c8fac33207d74d667680ade09447ea8f43b76d7",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "c0c4bb09d8394e8f001e337bd27ccac355433d9e",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "f95631bcbbbc56e18487dcb242cfb1b3e74b16a1",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "01a692ab6232e0882a313d148981bab58ab98f53",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "658060a680d415ce6690ad2c3b622ddb33ddd50a",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "80915b0bd9daa5e1f95cad573892980b1b5a2294",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
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       {
         "hashed_secret": "cc55977b293d8cdca8a2c19dfea6874e70057c41",
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       {
         "hashed_secret": "e400ed02add75dd5f3a8c212857acf12027437d1",
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       {
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       {
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       {
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       {
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       {
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     "kube/services/jobs/indexd-authz-job.yaml": [
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         "hashed_secret": "bf21a9e8fbc5a3846fb05b4fa0859e0917b2202f",
+        "is_secret": false,
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@@ -1077,12 +1191,14 @@
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@@ -1091,6 +1207,7 @@
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@@ -1099,6 +1216,7 @@
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@@ -1115,12 +1234,14 @@
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@@ -1129,30 +1250,35 @@
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@@ -1161,240 +1287,280 @@
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@@ -1403,6 +1569,7 @@
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@@ -1411,12 +1578,14 @@
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@@ -1425,6 +1594,7 @@
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@@ -1433,6 +1603,7 @@
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@@ -1441,12 +1612,14 @@
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@@ -1455,24 +1628,28 @@
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@@ -1481,18 +1658,21 @@
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@@ -1501,6 +1681,7 @@
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@@ -1509,12 +1690,14 @@
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@@ -1523,24 +1706,28 @@
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@@ -1549,36 +1736,42 @@
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@@ -1587,6 +1780,7 @@
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@@ -1595,6 +1789,7 @@
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@@ -1603,6 +1798,7 @@
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@@ -1611,6 +1807,7 @@
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+        "is_secret": false,
         "is_verified": false,
         "line_number": 231,
         "type": "Secret Keyword"
@@ -1619,6 +1816,7 @@
     "tf_files/gcp-bwg/roots/templates/answerfile-env-tenant.user.tfvars_NO_APP_SETUP": [
       {
         "hashed_secret": "f865b53623b121fd34ee5426c792e5c33af8c227",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 262,
         "type": "Secret Keyword"
@@ -1627,18 +1825,21 @@
     "tf_files/gcp/commons/sample.tfvars": [
       {
         "hashed_secret": "9f29ed52bc91ba45b309d5234e95edc7ca5286fd",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 11,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "8db3b325254b6389ca194d829d2fc923dc0a945d",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 26,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "253c7b5e7c83a86346fc4501495b130813f08105",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 37,
         "type": "Secret Keyword"
@@ -1647,6 +1848,7 @@
     "tf_files/shared/modules/k8s_configs/creds.tpl": [
       {
         "hashed_secret": "1f5e25be9b575e9f5d39c82dfd1d9f4d73f1975c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 8,
         "type": "Secret Keyword"
diff --git a/files/scripts/healdata/heal-cedar-data-ingest.py b/files/scripts/healdata/heal-cedar-data-ingest.py
index 730a3b36e8..71575e3c56 100644
--- a/files/scripts/healdata/heal-cedar-data-ingest.py
+++ b/files/scripts/healdata/heal-cedar-data-ingest.py
@@ -1,5 +1,5 @@
 import argparse
-import copy
+import json
 import sys
 import requests
 import pydash
@@ -35,16 +35,6 @@
     "Buisness Development": "Business Development"
 }
 
-# repository links
-REPOSITORY_STUDY_ID_LINK_TEMPLATE = {
-    "NIDDK Central": "https://repository.niddk.nih.gov/studies/<STUDY_ID>/",
-    "NIDA Data Share": "https://datashare.nida.nih.gov/study/<STUDY_ID>",
-    "NICHD DASH": "https://dash.nichd.nih.gov/study/<STUDY_ID>",
-    "ICPSR": "https://www.icpsr.umich.edu/web/ICPSR/studies/<STUDY_ID>",
-    "BioSystics-AP": "https://biosystics-ap.com/assays/assaystudy/<STUDY_ID>/",
-}
-
-
 # Defines field that we don't want to include in the filters
 OMITTED_VALUES_MAPPING = {
     "study_metadata.human_subject_applicability.gender_applicability": "Not applicable"
@@ -124,31 +114,6 @@ def get_client_token(client_id: str, client_secret: str):
     return token
 
 
-def get_related_studies(serial_num, hostname):
-    related_study_result = []
-
-    if serial_num:
-        mds = requests.get(f"http://revproxy-service/mds/metadata?nih_reporter.project_num_split.serial_num={serial_num}&data=true&limit=2000")
-        if mds.status_code == 200:
-            related_study_metadata = mds.json()
-
-            for (
-                related_study_metadata_key,
-                related_study_metadata_value,
-            ) in related_study_metadata.items():
-                title = (
-                    related_study_metadata_value.get(
-                        "gen3_discovery", {}
-                    )
-                    .get("study_metadata", {})
-                    .get("minimal_info", {})
-                    .get("study_name", "")
-                )
-                link = f"https://{hostname}/portal/discovery/{related_study_metadata_key}/"
-                related_study_result.append({"title": title, "link": link})
-    return related_study_result
-
-
 parser = argparse.ArgumentParser()
 
 parser.add_argument("--directory", help="CEDAR Directory ID for registering ")
@@ -249,67 +214,6 @@ def get_related_studies(serial_num, hostname):
                 mds_res["gen3_discovery"]["study_metadata"].update(cedar_record)
                 mds_res["gen3_discovery"]["study_metadata"]["metadata_location"]["other_study_websites"] = cedar_record_other_study_websites
 
-                # setup citations
-                doi_citation = mds_res["gen3_discovery"]["study_metadata"].get("doi_citation", "")
-                mds_res["gen3_discovery"]["study_metadata"]["citation"]["heal_platform_citation"] = doi_citation
-
-
-                # setup repository_study_link
-                data_repositories = (
-                    mds_res.get("study_metadata", {})
-                    .get("metadata_location", {})
-                    .get("data_repositories", [])
-                )
-                repository_citation = "Users must also include a citation to the data as specified by the local repository."
-                repository_citation_additional_text = ' The link to the study page at the local repository can be found in the "Data" tab.'
-                for repository in data_repositories:
-                    if (
-                        repository["repository_name"]
-                        and repository["repository_name"]
-                        in REPOSITORY_STUDY_ID_LINK_TEMPLATE
-                        and repository["repository_study_ID"]
-                    ):
-                        repository_study_link = REPOSITORY_STUDY_ID_LINK_TEMPLATE[
-                            repository["repository_name"]
-                        ].replace("<STUDY_ID>", repository["repository_study_ID"])
-                        repository.update({"repository_study_link": repository_study_link})
-                        if repository_citation_additional_text not in repository_citation:
-                            repository_citation += repository_citation_additional_text
-                if len(data_repositories):
-                    data_repositories[0] = {
-                        **data_repositories[0],
-                        "repository_citation": repository_citation,
-                    }
-                mds_res["gen3_discovery"]["study_metadata"][
-                    "metadata_location"
-                ]["data_repositories"] = data_repositories
-
-
-
-                # set up related studies
-                serial_num = None
-                try:
-                    serial_num = (
-                        mds_res
-                        .get("nih_reporter", {})
-                        .get("project_num_split", {})
-                        .get("serial_num", None)
-                    )
-                except Exception:
-                    print(f"Unable to get serial number for study")
-
-                if serial_num == None:
-                    print(f"Unable to get serial number for study")
-
-                related_study_result = get_related_studies(serial_num, hostname)
-                existing_related_study_result = mds_res.get("related_studies", [])
-                for related_study in related_study_result:
-                    if related_study not in existing_related_study_result:
-                        existing_related_study_result.append(copy.deepcopy(related_study))
-                mds_res["gen3_discovery"][
-                    "related_studies"
-                ] = copy.deepcopy(existing_related_study_result)
-
                 # merge data from cedar that is not study level metadata into a level higher
                 deleted_keys = []
                 for key, value in mds_res["gen3_discovery"]["study_metadata"].items():