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Distance 2 with indels #2

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torognes opened this issue Apr 9, 2021 · 1 comment
Open

Distance 2 with indels #2

torognes opened this issue Apr 9, 2021 · 1 comment
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enhancement New feature or request

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torognes commented Apr 9, 2021

Due to the way sequence variants are generated, in some cases variants at distance 2 with indels may be generated multiple times and the resulting values may be inaccurate.
@torognes torognes added the bug Something isn't working label Apr 9, 2021
@torognes torognes self-assigned this Apr 9, 2021
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The use of indels in combination with 2 differences (-d 2 -i) has been disabled for now. It may be enabled later when the relevant code has been debugged fully.

However, the combination of these options may be useless because repertoires may become too similar.

@torognes torognes added enhancement New feature or request and removed bug Something isn't working labels Apr 13, 2021
@torognes torognes changed the title Potential bugs when using distance 2 and indels Distance 2 and indels Apr 13, 2021
@torognes torognes changed the title Distance 2 and indels Distance 2 with indels Apr 13, 2021
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