Important: More information allows me to grasp your issue faster

[zengxiaofei]

Often, I cannot fully grasp the issue solely from an error message.

To help me better understand the problem you are facing, please provide the following information as much as possible:

1. The karyotype of the species (e.g., 2n=4x=32).
2. The commands and parameters used in running HapHiC.
3. The log files generated by HapHiC.
4. The methods (commands) used for Hi-C read mapping and filtering.
5. The method used for genome assembly (e.g., hifiasm + Hi-C) and the assembly utilized for scaffolding (e.g., p_ctg, hap*.p_ctg or p_utg)
6. Statistics for the assembly input into HapHiC (e.g., N10-N90 and L10-L90); you can calculate them using this tool:

$ gunzip fa_detail.gz
$ chmod 755 fa_detail
$ fa_detail asm.fa

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