add Keogh et al. to acknowledgements. #183
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| name: Build, test and generate docs | |
| on: | |
| push: | |
| branches: | |
| - main # Due to protection of branches only main can push docs | |
| # paths: | |
| # - 'dtwc/**' | |
| # - 'docs/**' | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| # Build job | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout current branch | |
| uses: actions/checkout@v4 | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v5 | |
| - name: Build master with Jekyll | |
| uses: actions/jekyll-build-pages@v1 | |
| with: | |
| source: 'docs' | |
| destination: ./_site | |
| - run: sudo rm -rf build | |
| - run: mkdir build | |
| - name: Create Doxygen Files | |
| uses: mattnotmitt/[email protected] | |
| with: | |
| doxyfile-path: 'docs/Doxyfile' | |
| - run: sudo sed -ri 's/<div id="projectname">(.*)/<div id="projectname"><a href="..\/index.html">\1 <\/a>/g' ./build/Doxygen/html/index.html | |
| - run: sudo mv ./build/Doxygen/html ./_site/Doxygen | |
| - run: sudo cp -r ./media ./_site/Doxygen #Copy media folder into Doxygen folder. | |
| # Create a coverage report and upload to the website! | |
| - name: update | |
| run: sudo apt update | |
| - name: install compiler and dependencies | |
| run: sudo apt install gcc-11 g++-11 lcov | |
| - name: make build directory | |
| run: mkdir build_dir | |
| - name: cmake configure | |
| run: cmake .. -DCMAKE_BUILD_TYPE=Debug -DDTWC_ENABLE_COVERAGE:BOOL=TRUE -DDTWC_BUILD_TESTING=ON | |
| working-directory: build_dir | |
| env: | |
| CC: gcc-11 | |
| CXX: g++-11 | |
| - name: cmake build | |
| run: cmake --build . --parallel 2 | |
| working-directory: build_dir | |
| - name: cmake test | |
| run: ctest -j2 -C Debug --output-on-failure | |
| working-directory: build_dir | |
| - name: upload coverage results | |
| run: | | |
| lcov --directory ./tests --capture --output-file coverage.info | |
| lcov --remove coverage.info '*/tests/*' '*/armadillo_bits/*' '*/eigen-src/*' '/_deps/*' '/usr/*' '*/catch2/*' --output-file coverage.info | |
| lcov --list coverage.info | |
| bash <(curl https://codecov.io/bash) -f coverage.info | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| working-directory: build_dir | |
| - name: generate html report for website | |
| run: genhtml coverage.info -o Coverage | |
| working-directory: build_dir | |
| - run: sudo mv ./build_dir/Coverage ./_site/Coverage | |
| # JOSS Paper Compilation Steps | |
| - name: Build draft PDF for JOSS paper | |
| uses: openjournals/openjournals-draft-action@master | |
| with: | |
| journal: joss | |
| paper-path: joss/paper.md | |
| - name: Create directory for JOSS paper | |
| run: sudo mkdir -p ./_site/pub | |
| - name: Move JOSS paper to documentation | |
| run: sudo mv ./joss/paper.pdf ./_site/pub/joss.pdf | |
| # Upload the website: | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| # Publication job | |
| publish: | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |