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  1. COPD-Microbiome-Shift-Analysis COPD-Microbiome-Shift-Analysis Public

    This is the repository for a bioinformatics project about identifying the optimal pipeline for identifying a potential microbiome shift in COPD patients after ceasing azithromycin treatment.

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  2. NanoCLUST-tutorial NanoCLUST-tutorial Public

    This is a tutorial that helps people without command-line experience install and run NanoCLUST.

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  3. EMC-CanMic EMC-CanMic Public

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

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  4. NGS-assignment-workflow NGS-assignment-workflow Public

    Repository of the NGS workflow building assignment of Yke Stockman, Isabelle Sewsahai, Mathijs Schouten en Birgit Rijvers

  5. NanoCLUST_runner NanoCLUST_runner Public

    Python script that runs NanoCLUST on files in a directory with only 1 command.

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  6. MetONTIIME_extra_diversity MetONTIIME_extra_diversity Public

    Forked from MaestSi/MetONTIIME

    A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework, with extra diversity analysis included

    Nextflow 1