v1.4.1

What's Changed

• Updated submission link to reflect redirection of submit page, to the… by @MGS-sails in #40
• Adds documentation page about "additional analyses" (RO-Crates) by @SandyRogers in #41
• Update MGnifyR repo by @SandyRogers in #42
• Update genome-viewer.md by @tgurbich in #44
• Small bug fixed on Pathways Vis notebook by @Ales-ibt in #43

New Contributors

• @MGS-sails made their first contribution in #40

Full Changelog: v1.4.0...v1.4.1

v1.4.0

What's Changed

• Push built containers to registry by @SandyRogers in #38

Full Changelog: v1.3.2...v1.4.0

v1.3.2

What's Changed

• AtlantECO notebook by @KateSakharova in #35
• docs: add KateSakharova as a contributor for ideas, code, and content by @allcontributors in #37

New Contributors

• @KateSakharova made their first contribution in #35

Full Changelog: v1.3.1...v1.3.2

v1.3.1

Full Changelog: v1.3.0...v1.3.1
Maintenance release.

v1.3.0

What's Changed

• Multi stage build by @SandyRogers in #33

Full Changelog: v1.2.3...v1.3.0

v1.2.3

What's Changed

• Pathways visualisation by @Ales-ibt and @amartyanambiar in #26

Full Changelog: v1.2.2...v1.2.3

v1.2.2

What's Changed

• Corrected typos by @tgurbich in #29

Full Changelog: v1.2.1...v1.2.2

v1.2.1

What's Changed

• GSC workshop notebook by @tgurbich in #28

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• Biohackaton2022 genomes notebook by @vestalisvirginis in #11
• Switch to jupyter/minimal-notebook:lab-3.6.3 as base image, since the Conda environments for Py and R are now split, we do not need any science packages installed in the base conda env – just Jupyter.
• Replace query-parameters forwarding extension (deep links support) with newer JupyterLab template.
• A bit more conda environment rationalising.

TODO but not done this time

• Consider use of conda-pack/unpack and multi-stage docker build to reduce size of docker image. Current size seems to be too large for GitHub Actions.
• Move example-data to a remote source (e.g. somewhere in this git repo), or at least gzip it.
• Upgrade to JupyterLab 4. Currently, there is a problem with the default URL being the notebook tree instead of lab.

New Contributors

• @vestalisvirginis made their first contribution in #11

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Adds static documentation (docs.mgnify.org) by @SandyRogers in #22
• Separating python and r kernels into their own conda envs by @SandyRogers in #23

Full Changelog: v1.0.1...v1.1.0