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Processing macromodel output file with alignmol function from RDkit

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CSearch_alignmol

Scripts supporting 'Selective Functionalisation of 5-Methylcytosine by Organic Photoredox Catalysis' M. M. Simpson, C. C. Lam, J. M. Goodman, S. Balasubramanian, Angew. Chem. Int. Ed. 2023, 62, e202304756. (https://doi.org/10.1002/anie.202304756)

Processing macromodel conformational searching output files with the alignmol function from RDkit

  1. Download the files in this folder and make sure that they are in the same directory
  2. open the 'CSearch_process.ipynb' file with jupyter notebook (python 3) or equivalent. Run all the cells in the script.

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Processing macromodel output file with alignmol function from RDkit

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