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@HelmholtzAI-Consultants-Munich

HelmholtzAI-consultants-HMGU

Leading in applied AI by combining unique research questions, data and expertise with democratized access to new tools.

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  1. Automatic-Cell-Counter Automatic-Cell-Counter Public

    A GUI based on napari for counting cells automatically in cell migration experiments

    Python 37 10

  2. Quicksetup-ai Quicksetup-ai Public

    A flexible template, as a quick setup for deep learning projects in pytorch-lightning

    Python 43 7

  3. PySDDR PySDDR Public

    A python package for semi-structured deep distributional regression

    Jupyter Notebook 21 8

  4. fg-clustering fg-clustering Public

    Explainability for Random Forest Models.

    Jupyter Notebook 26 6

  5. oligo-designer-toolsuite oligo-designer-toolsuite Public

    Develop custom oligo design pipelines.

    Python 13 3

  6. napari-organoid-counter napari-organoid-counter Public

    A napari plugin for counting organoids from brightfield microscopy images with deep learning

    Python 9 2

Repositories

Showing 10 of 20 repositories
  • oligo-designer-toolsuite Public

    Develop custom oligo design pipelines.

    HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite’s past year of commit activity
    Python 13 3 8 1 Updated Jul 17, 2024
  • data-centric-platform Public

    A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches

    HelmholtzAI-Consultants-Munich/data-centric-platform’s past year of commit activity
    Python 8 BSD-3-Clause 5 11 (1 issue needs help) 1 Updated Jul 17, 2024
  • Colorectal-Cancer-Organoids-Detection Public

    TODO

    HelmholtzAI-Consultants-Munich/Colorectal-Cancer-Organoids-Detection’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 17, 2024
  • napari-organoid-counter Public

    A napari plugin for counting organoids from brightfield microscopy images with deep learning

    HelmholtzAI-Consultants-Munich/napari-organoid-counter’s past year of commit activity
    Python 9 MIT 2 7 0 Updated Jul 12, 2024
  • EffiDict Public
    HelmholtzAI-Consultants-Munich/EffiDict’s past year of commit activity
    Jupyter Notebook 0 MIT 0 4 0 Updated Jun 5, 2024
  • oligo-designer-toolsuite-AI-filters Public

    AI plug-ins for the Oligo Designer Toolsuite package

    HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite-AI-filters’s past year of commit activity
    Python 1 0 0 0 Updated May 23, 2024
  • XAI-Tutorials Public template

    Self-explanatory tutorials for different model-agnostic and model-specific XAI methods

    HelmholtzAI-Consultants-Munich/XAI-Tutorials’s past year of commit activity
    Jupyter Notebook 43 CC-BY-4.0 18 0 0 Updated May 16, 2024
  • AURORA Public

    WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.

    HelmholtzAI-Consultants-Munich/AURORA’s past year of commit activity
    Python 1 AGPL-3.0 0 0 0 Updated Apr 17, 2024
  • Echo2Pheno Public

    A deep learning application to uncover echocardiographic phenotypes

    HelmholtzAI-Consultants-Munich/Echo2Pheno’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Nov 22, 2023
  • Quicksetup-ai Public

    A flexible template, as a quick setup for deep learning projects in pytorch-lightning

    HelmholtzAI-Consultants-Munich/Quicksetup-ai’s past year of commit activity
    Python 43 MIT 7 9 0 Updated Oct 26, 2023
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