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@IGS

Institute for Genome Sciences

IGS has helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense.

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  1. biocode biocode Public

    Forked from jorvis/biocode

    Bioinformatics script collection

    Python 6 1

  2. Chiron Chiron Public

    Tools and utilities for running Dockerized metagenomics tools in the Cloud

    C++ 23 18

  3. FADU FADU Public

    Feature Aggregate Depth Utility

    Julia 10 1

  4. OSDF OSDF Public

    Forked from victor73/OSDF

    Open Science Data Framework (OSDF)

    JavaScript 8 2

  5. osdf-python osdf-python Public

    A Python OSDF (Open Science Data Framework) client

    Python 3 3

  6. portal_client portal_client Public

    Python-based client for downloading data made available through portals powered by the GDC-based portal system..

    Python 16 17

Repositories

Showing 10 of 29 repositories
  • gEAR Public

    The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

    IGS/gEAR’s past year of commit activity
    Jupyter Notebook 10 AGPL-3.0 5 237 1 Updated Jul 2, 2024
  • ergatis Public Forked from jorvis/ergatis

    Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.

    IGS/ergatis’s past year of commit activity
    Perl 0 15 0 0 Updated Jun 24, 2024
  • FADU Public

    Feature Aggregate Depth Utility

    IGS/FADU’s past year of commit activity
    Julia 10 AGPL-3.0 1 1 0 Updated Jun 18, 2024
  • rnaseq-docker Public

    Dockerized version of the IGS transciptomics pipeline and associated utilities

    IGS/rnaseq-docker’s past year of commit activity
    Python 0 0 0 1 Updated Jun 18, 2024
  • osdf-nodejs-client Public

    A node.js client for the Open Science Data Framework (OSDF)

    IGS/osdf-nodejs-client’s past year of commit activity
    JavaScript 1 MIT 0 0 1 Updated Jun 17, 2024
  • portal_client Public

    Python-based client for downloading data made available through portals powered by the GDC-based portal system..

    IGS/portal_client’s past year of commit activity
    Python 16 MIT 17 11 0 Updated May 18, 2023
  • disease-ontology Public

    Disease Ontology

    IGS/disease-ontology’s past year of commit activity
    0 0 0 0 Updated Mar 6, 2023
  • report-generator Public

    Repository for new python based report and bdbag generator.

    IGS/report-generator’s past year of commit activity
    Python 0 0 0 0 Updated Jan 12, 2023
  • portal-ui Public

    UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.

    IGS/portal-ui’s past year of commit activity
    JavaScript 4 Apache-2.0 20 0 2 Updated Dec 13, 2022
  • rnaseq-pipeline Public

    IGS Transcriptomics Pipeline

    IGS/rnaseq-pipeline’s past year of commit activity
    Perl 1 0 0 0 Updated Mar 16, 2022
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