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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 69 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 46 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 260 repositories
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Jul 18, 2024
  • VVDViewer Public

    3D/4D volumetric rendering of microscopy data

    JaneliaSciComp/VVDViewer’s past year of commit activity
    C++ 17 BSD-3-Clause 5 3 1 Updated Jul 18, 2024
  • ossi-website Public

    Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

    JaneliaSciComp/ossi-website’s past year of commit activity
    JavaScript 1 BSD-3-Clause 13 16 1 Updated Jul 17, 2024
  • xarray-multiscale Public

    scalable multiscale image pyramids in python

    JaneliaSciComp/xarray-multiscale’s past year of commit activity
    Python 26 BSD-3-Clause 3 5 2 Updated Jul 17, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 7 0 Updated Jul 17, 2024
  • nextflow-modules Public

    Nextflow modules for use with nf-core tooling

    JaneliaSciComp/nextflow-modules’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Jul 17, 2024
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Jul 17, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 1 Updated Jul 17, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 1 15 0 Updated Jul 16, 2024
  • beyene-lab Public
    JaneliaSciComp/beyene-lab’s past year of commit activity
    MATLAB 0 BSD-3-Clause 0 0 0 Updated Jul 16, 2024
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