rkipcreg

This repo contains the code for reproducing the figures and tables in the poster titled:

Co-regulation of RKIP and autophagy genes by VEZF1 and ERCC6 in prostate cancer

Docker environment

$ docker pull bcmslab/cregart:20181219
$ docker run -it bcmslab/cregart:20181219 bash

Intiating the code

$ git clone https://github.com/MahShaaban/rkipcreg
$ cd rkipcreg
$ make

Parts of the work presented in this poster were published in the following two articles:

• Ahmed, M., Lai, T., Zada, S., Hwang, J., Pham, T., Yun, M., & Kim, D. (2018). Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer. Cancers, 10(8), 273. https://doi.org/10.3390/cancers10080273
• Article: cRegulome: An R package for accessing microRNA and transcription factor-gene expression correlations in cancer (in press)