ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences. This package has been tested with R 3.2
The following representations are supported.
- Mismatch/Dimismatch kernel:
build.mismatch.dictionary - Positional wildcard kernel:
build.wildcard.dictionary
After the dictionary is built, use the build.features.kernels function to determine the feature matrix and kernel for DNA Sequences.