Skip to content

Issues: MarioniLab/miloR

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

29 Open 211 Closed
29 Open 211 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

MiloR in spatial transcriptomics data
#344 opened Jul 5, 2024 by zeniazen5
Mass cytometry data
#343 opened Jul 4, 2024 by NicoFuenza
1
Import precomputed graph
#340 opened Jun 24, 2024 by Dannyxu123
7
Existence of 2 tuitorials for the "Differential abundance testing with Milo - Mouse gastrulation example"
#339 opened Jun 19, 2024 by JesseRop
3
Direction of test for logFC calculation
#338 opened Jun 19, 2024 by RemiDL
1
How to use MiloR after subsetting the cell types from total cell types?
#337 opened Jun 18, 2024 by mainharryHR
4
Log10 FC or Log2 FC?
#336 opened Jun 18, 2024 by mainharryHR
1
Does MiloR take into account that the two compared conditions have different number of cells?
#335 opened Jun 14, 2024 by crodriguezres
2
Error in scale_color_gradient2()
#321 opened May 6, 2024 by ShashTrip1
5
Predefined Graph Import Still Not Available to Use documentation Improvements or additions to documentation
#318 opened Apr 10, 2024 by DarioS
4
Design matrix and nhood counts are not the same dimension
#317 opened Apr 5, 2024 by nbutyrate
1
Error: (converted from warning) 'as(<dgTMatrix>, "dgCMatrix")' is deprecated.
#314 opened Mar 15, 2024 by Lil-5
4
Results Changed
#313 opened Mar 13, 2024 by ShashTrip1
2
Reorder Ident in plotDAbeeswarm
#311 opened Mar 9, 2024 by ShashTrip1
4
plotNhoodGraphDA does not display logFC data
#309 opened Feb 29, 2024 by tnystul
2
error in makeNhoods
#307 opened Feb 15, 2024 by GrigoriiNos
3
How to implement more complex contrast formulas
#305 opened Feb 2, 2024 by CarlottaHS
5
scVI corrected dimensions with MiloR
#300 opened Jan 5, 2024 by LinearParadox
1
Choice of fdr.weighting in testNhoods
#299 opened Dec 22, 2023 by bazelep
2
Can I run calcNhoodDistance before countCells
#293 opened Nov 2, 2023 by yulijia
3
Problem in buildNhoodGraph on a large dataset
#290 opened Sep 1, 2023 by moinfar
5
merging Nhood with logFC of opposite sign bug Something isn't working
#270 opened Mar 3, 2023 by gianfilippo
@MikeDMorgan
15
support for time points from same donor
#268 opened Feb 24, 2023 by zia1138
11
Overlay DA neighborhoods on embedding
#251 opened Nov 16, 2022 by mdmanurung
Annotating nhoods by continuous covariates
#218 opened May 10, 2022 by emdann
1
ProTip! Adding no:label will show everything without a label.