Get rid of llvm again #7
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| name: mcxtrace-basictest | |
| on: | |
| push: | |
| schedule: | |
| - cron: '55 23 * * 0' # 23:55 every Sunday | |
| workflow_dispatch: | |
| inputs: | |
| manual-debugging: | |
| type: boolean | |
| description: Launch manual debugging tmate for inspection (automatic in case of errors) | |
| default: false | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| include: | |
| - { os: ubuntu-20.04, CC: gcc-10, CXX: g++-10, python: '3.8' } | |
| - { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.9' } | |
| - { os: ubuntu-latest, CC: gcc, CXX: g++, python: '3.10' } | |
| - { os: ubuntu-latest, CC: clang, CXX: clang++, python: '3.11' } | |
| - { os: ubuntu-latest, CC: gcc-12, CXX: g++-12, python: '3.11' } | |
| # - { os: macos-11, CC: clang, CXX: clang++, python: "3.10" } | |
| - { os: macos-12, CC: clang, CXX: clang++, python: "3.11" } | |
| # - { os: macos-13, CC: clang, CXX: clang++, python: "3.11" } | |
| - { os: windows-latest, CC: gcc, CXX: g++, python: "3.11" } | |
| # - { os: windows-2019, CC: gcc, CXX: g++, python: "3.11" } | |
| name: ${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: src | |
| - name: Setup python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup Bison | |
| id: setup-flex-bison | |
| run: | | |
| if [ "x$(uname)" == "xDarwin" ]; then brew install bison flex; fi | |
| if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ]; then choco install winflexbison3; fi | |
| - name: Setup OpenMPI | |
| id: setup-openmpi | |
| run: | | |
| if [ "x$(uname)" == "xLinux" ]; then sudo apt -y install libopenmpi-dev; fi | |
| if [ "x$(uname)" == "xDarwin" ]; then brew install openmpi; fi | |
| - name: Check versions | |
| id: version-checks | |
| run: | | |
| which python3 | |
| python3 --version | |
| which cmake | |
| cmake --version | |
| #NB: bison and flex in path are actually too old, we will install the | |
| # keg-only recipes for them later: | |
| #bison --version | |
| #flex --version | |
| - name: Configure build and install mcxtrace | |
| id: mcxtrace-install | |
| run: | | |
| if [ "x$(uname)" == "xDarwin" ]; then export SDKROOT=$(xcrun --sdk macosx --show-sdk-path); fi | |
| set -e | |
| set -u | |
| set -x | |
| mkdir build_mcxtrace | |
| cd build_mcxtrace | |
| export EXTRA_ARGS_FOR_CMAKE="" | |
| if [ "x$(uname)" == "xDarwin" ]; then export EXTRA_ARGS_FOR_CMAKE="-DBISON_EXECUTABLE=/usr/local/opt/bison/bin/bison -DFLEX_EXECUTABLE=/usr/local/opt/flex/bin/flex"; fi | |
| if [ "x$(uname)" == "xLinux" ]; then export EXTRA_ARGS_FOR_CMAKE="-DNEXUSLIB=/usr/lib -DNEXUSINCLUDE=/usr/include/nexus"; fi | |
| cmake \ | |
| -DCMAKE_INSTALL_PREFIX=../install_mcxtrace \ | |
| -S ../src \ | |
| -G "Unix Makefiles" \ | |
| -DMCVERSION="3.99.99" \ | |
| -DMCCODE_BUILD_CONDA_PKG=ON \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DCMAKE_INSTALL_LIBDIR=lib \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_MCXTRACE=ON \ | |
| -DMCCODE_USE_LEGACY_DESTINATIONS=OFF \ | |
| -DBUILD_TOOLS=ON \ | |
| -DENABLE_COMPONENTS=ON \ | |
| -DENSURE_MCPL=ON \ | |
| -DENSURE_NCRYSTAL=OFF \ | |
| -DENABLE_CIF2HKL=OFF \ | |
| ${EXTRA_ARGS_FOR_CMAKE} | |
| cmake --build . --config Release | |
| cmake --build . --target install --config Release | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f "../install_mcxtrace/bin/${MCXTRACE_EXECUTABLE}" | |
| test -f "../install_mcxtrace/bin/${MXRUN_EXECUTABLE}" | |
| test -f "../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/__init__.py" | |
| test -d "../install_mcxtrace/share/mcxtrace/resources/data" | |
| - name: Pip install various | |
| id: pip-install | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| python3 -mpip install PyYAML ply McStasscript | |
| - name: Launch basic test instrument | |
| id: JJ_SAXS-tests | |
| # Status: Works on Windows + Unixes | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_JJ_SAXS && cd run_JJ_SAXS | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/JJ_SAXS.instr . | |
| #Not a final solution!!!: | |
| if [ "x$(uname)" == "xDarwin" ]; then export MCXTRACE_CC_OVERRIDE=/usr/bin/clang; fi | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| ../install_mcxtrace/bin/${MCXTRACE_PYGEN_EXECUTABLE} JJ_SAXS.instr | |
| if [ "x$(uname | cut -f1 -d_)" != "xMINGW64" ]; | |
| then | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} -c --mpi=2 JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| fi | |
| - name: Launch MCPL test instrument | |
| id: mcpl-test | |
| # Status: Works on Unixes ("wrapper batches missing for Windows") | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_Test_MCPL_input && cd run_Test_MCPL_input | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/Test_MCPL_input.instr . | |
| #Not a final solution!!!: | |
| if [ "x$(uname)" == "xDarwin" ]; then export MCXTRACE_CC_OVERRIDE=/usr/bin/clang; fi | |
| if [ "x$(uname | cut -f1 -d_)" != "xMINGW64" ]; | |
| then | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} Test_MCPL_input.instr repeat=10 | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} -c --mpi=2 Test_MCPL_input.instr repeat=20 | |
| fi | |
| - name: 'Tar output files' | |
| id: tar-package | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export TESTOS=`uname | cut -f1 -d_` && export TESTREL=`uname -r` && tar cvfz mcxtrace-${TESTOS}_${TESTREL}_output.tgz run_* | |
| - name: 'Upload Artifact' | |
| id: tar-upload | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: my-artifact | |
| path: "*_output.tgz" | |
| - name: Setup tmate session for manual debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: always() && (inputs.manual-debugging == true || steps.tar-package.outcome != 'success') | |
| with: | |
| limit-access-to-actor: true |