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Pyqtgraph replacement in webgl upgrade #467

Pyqtgraph replacement in webgl upgrade

Pyqtgraph replacement in webgl upgrade #467

name: mcstas-basictest
on:
push:
pull_request:
schedule:
- cron: '30 23 * * 0' # 23:30 every Sunday
workflow_dispatch:
inputs:
manual-debugging:
type: boolean
description: Launch manual debugging tmate for inspection (automatic in case of errors)
default: false
jobs:
build:
strategy:
fail-fast: false
matrix:
include:
- { os: ubuntu-20.04, CC: gcc-10, CXX: g++-10, python: '3.8' }
- { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.9' }
- { os: ubuntu-22.04, CC: gcc, CXX: g++, python: '3.10' }
- { os: ubuntu-22.04, CC: clang, CXX: clang++, python: '3.11' }
- { os: ubuntu-22.04, CC: gcc-12, CXX: g++-12, python: '3.11' }
- { os: macos-12, CC: clang, CXX: clang++, python: "3.11" }
- { os: macos-13, CC: clang, CXX: clang++, python: "3.11" }
- { os: windows-latest, CC: gcc, CXX: g++, python: "3.11" }
name: ${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}
runs-on: ${{ matrix.os }}
env:
CC: ${{ matrix.CC }}
CXX: ${{ matrix.CXX }}
defaults:
run:
shell: bash -el {0}
steps:
- name: Checkout
uses: actions/checkout@v4
with:
path: src
- name: Setup python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Setup Bison (macOS)
id: setup-flex-bison-macos
if: runner.os == 'macOS'
run: |
brew install bison flex
- name: Setup Bison (Windows)
id: setup-flex-bison-Windows
if: runner.os == 'Windows'
run: |
choco install winflexbison3
pip install mslex
- name: Setup OpenMPI (Linux)
id: setup-openmpi-linux
if: runner.os == 'Linux'
run: |
sudo apt -y install libopenmpi-dev
- name: Setup OpenMPI (macOS-12,13)
id: setup-openmpi-macos12
if: runner.os == 'macOS' && matrix.os != 'macos-11'
run: |
brew install openmpi
- name: Check versions
id: version-checks
run: |
which python3
python3 --version
which cmake
cmake --version
#NB: bison and flex in path are actually too old, on mac we
#inject these via a brew keg later
- name: Configure build and install mcstas
id: mcstas-install
run: |
if [ "$RUNNER_OS" == "macOS" ]; then export SDKROOT=$(xcrun --sdk macosx --show-sdk-path); fi
set -e
set -u
set -x
mkdir build_mcstas
cd build_mcstas
export EXTRA_ARGS_FOR_CMAKE=""
if [ "$RUNNER_OS" == "macOS" ]; then export EXTRA_ARGS_FOR_CMAKE="-DBISON_EXECUTABLE=/usr/local/opt/bison/bin/bison -DFLEX_EXECUTABLE=/usr/local/opt/flex/bin/flex"; fi
if [ "$RUNNER_OS" == "Linux" ]; then export EXTRA_ARGS_FOR_CMAKE="-DNEXUSLIB=/usr/lib -DNEXUSINCLUDE=/usr/include/nexus"; fi
cmake \
-DCMAKE_INSTALL_PREFIX=../install_mcstas \
-S ../src \
-G "Unix Makefiles" \
-DMCVERSION="3.99.99" \
-DMCCODE_BUILD_CONDA_PKG=ON \
-DBUILD_SHARED_LIBS=ON \
-DCMAKE_INSTALL_LIBDIR=lib \
-DCMAKE_BUILD_TYPE=Release \
-DBUILD_MCSTAS=ON \
-DMCCODE_USE_LEGACY_DESTINATIONS=OFF \
-DBUILD_TOOLS=ON \
-DENABLE_COMPONENTS=ON \
-DENSURE_MCPL=ON \
-DENSURE_NCRYSTAL=OFF \
-DENABLE_CIF2HKL=OFF \
-DENABLE_NEUTRONICS=OFF \
${EXTRA_ARGS_FOR_CMAKE}
cmake --build . --config Release
cmake --build . --target install --config Release
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
if [ "$RUNNER_OS" == "Windows" ];
then
export MCSTAS_EXECUTABLE="mcstas.exe"
export MCRUN_EXECUTABLE="mcrun.bat"
fi
test -f "../install_mcstas/bin/${MCSTAS_EXECUTABLE}"
test -f "../install_mcstas/bin/${MCRUN_EXECUTABLE}"
test -f "../install_mcstas/share/mcstas/tools/Python/mccodelib/__init__.py"
test -d "../install_mcstas/share/mcstas/resources/data"
echo *******************************************************************************
echo Resulting mccode_config.json:
echo *******************************************************************************
cat ../install_mcstas/share/mcstas/tools/Python/mccodelib/mccode_config.json
echo *******************************************************************************
- name: Pip install various
id: pip-install
run: |
set -e
set -u
set -x
python3 -mpip install PyYAML ply McStasscript
if [ "$RUNNER_OS" != "Windows" ];
then
python3 -mpip install ncrystal
fi
- name: Launch BNL_H8 instrument
id: h8-test
# Status: Works on Windows + Unixes
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen"
export MCRUN_EXECUTABLE="mcrun"
if [ "$RUNNER_OS" == "Windows" ];
then
export MCSTAS_EXECUTABLE="mcstas.exe"
export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen.exe"
export MCRUN_EXECUTABLE="mcrun.bat"
fi
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_BNL_H8 && cd run_BNL_H8
cp ../install_mcstas/share/mcstas/resources/examples/BNL/BNL_H8/BNL_H8.instr .
../install_mcstas/bin/${MCRUN_EXECUTABLE} BNL_H8.instr lambda=2.36
../install_mcstas/bin/${MCSTAS_PYGEN_EXECUTABLE} BNL_H8.instr
- name: Launch BNL_H8 instrument (MPI)
id: h8-test-mpi
if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCSTAS_PYGEN_EXECUTABLE="mcstas-pygen"
export MCRUN_EXECUTABLE="mcrun"
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_BNL_H8_mpi && cd run_BNL_H8_mpi
cp ../install_mcstas/share/mcstas/resources/examples/BNL/BNL_H8/BNL_H8.instr .
../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=2 BNL_H8.instr lambda=2.36
- name: Launch MCPL test instrument
id: mcpl-test
if: runner.os == 'Linux' || runner.os == 'macOS' # Linux or macOS only
# Status: Works on Unixes ("wrapper batches missing for Windows")
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_ESS_BEER_MCPL && cd run_ESS_BEER_MCPL
cp ../install_mcstas/share/mcstas/resources/examples/ESS/ESS_BEER_MCPL/* .
../install_mcstas/bin/${MCRUN_EXECUTABLE} ESS_BEER_MCPL.instr repetition=50
- name: Launch MCPL test instrument (mpi)
id: mcpl-test-mpi
if: runner.os == 'Linux' || (runner.os == 'macOS' && matrix.os != 'macos-11') # Linux or macos-12/13 only
# Status: Works on Unixes ("wrapper batches missing for Windows")
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_ESS_BEER_MCPL_mpi && cd run_ESS_BEER_MCPL_mpi
cp ../install_mcstas/share/mcstas/resources/examples/ESS/ESS_BEER_MCPL/* .
../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=2 ESS_BEER_MCPL.instr repetition=100
- name: Launch NCrystal test instrument
id: ncrystal-test
if: runner.os == 'Linux' || runner.os == 'macOS' # Linux or macOS only
# Status: Works on Unixes ("ncrystal missing for Windows")
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_NCrystal_example && cd run_NCrystal_example
cp ../install_mcstas/share/mcstas/resources/examples/NCrystal/NCrystal_example/NCrystal_example.instr .
../install_mcstas/bin/${MCRUN_EXECUTABLE} NCrystal_example.instr sample_cfg="Y2O3_sg206_Yttrium_Oxide.ncmat\;density=0.6x"
- name: Launch NCrystal test instrument (mpi)
id: ncrystal-test-mpi
if: runner.os == 'Linux'
# Status: Works on Unixes ("ncrystal missing for Windows")
run: |
set -e
set -u
set -x
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_NCrystal_example_mpi && cd run_NCrystal_example_mpi
cp ../install_mcstas/share/mcstas/resources/examples/NCrystal/NCrystal_example/NCrystal_example.instr .
clang --version
mpirun --version
ncrystal-config --version
if [ "x$(uname)" == "xLinux" ]; then
export NUM_MPI=2
else
export NUM_MPI=1
fi
../install_mcstas/bin/${MCRUN_EXECUTABLE} --mpi=${NUM_MPI} NCrystal_example.instr sample_cfg="Y2O3_sg206_Yttrium_Oxide.ncmat\;density=0.6x"
- name: Launch NeXus test instrument
id: nexus-test
if: runner.os == 'Linux' # Linux only
# Status: Works on Linux (NeXus packages w/napi.h missing on mac+Windows)
run: |
set -e
set -u
set -x
sudo apt-get update
sudo apt-get -y install libnexus-dev
export MCSTAS_EXECUTABLE="mcstas"
export MCRUN_EXECUTABLE="mcrun"
export PATH=${PATH}:${PWD}/install_mcstas/bin/:${PWD}/install_mcstas/mcstas/3.99.99/bin/
if [ "x$(uname | cut -f1 -d_)" == "xMINGW64" ];
then
export MCSTAS_EXECUTABLE="mcstas.exe"
export MCRUN_EXECUTABLE="mcrun.bat"
fi
test -f ./install_mcstas/bin/${MCSTAS_EXECUTABLE}
./install_mcstas/bin/${MCSTAS_EXECUTABLE} --version
mkdir run_templateSANS_Mantid && cd run_templateSANS_Mantid
cp ../install_mcstas/share/mcstas/resources/examples/Mantid/templateSANS_Mantid/templateSANS_Mantid.instr .
#Not a final solution!!!:
#if [ "x$(uname)" == "xDarwin" ]; then export MCSTAS_CC_OVERRIDE=/usr/bin/clang; fi
if [ "x$(uname)" == "xLinux" ]; then
../install_mcstas/bin/${MCRUN_EXECUTABLE} --format=NeXus --IDF templateSANS_Mantid.instr lambda=6
../install_mcstas/bin/${MCRUN_EXECUTABLE} -c --mpi=2 --format=NeXus --IDF templateSANS_Mantid.instr lambda=6
fi
- name: 'Tar output files'
id: tar-package
if: always()
run: |
set -e
set -u
set -x
tar cvfz mcstas-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz run_*
- name: 'Upload Artifact'
id: tar-upload
uses: actions/upload-artifact@v4
if: always()
with:
name: mcstas-artefacts-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}
path: "mcstas-${{ matrix.os }}.${{ matrix.CC }}.python-${{ matrix.python }}_output.tgz"
- name: Setup tmate session for manual debugging
uses: mxschmitt/action-tmate@v3
if: always() && (inputs.manual-debugging == true && steps.tar-package.outcome != 'success')
with:
limit-access-to-actor: true