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@NCI-CGR

NCI-Cancer Genomics Research Lab/FNLCR

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  1. MoCCA-SV MoCCA-SV Public

    A Flexible Ensemble Framework for Structural Variant Analysis

    Python 6 1

  2. cgrHPV16 cgrHPV16 Public

    Python 5 1

  3. TypeSeqHPV TypeSeqHPV Public

    NCI CGR laboratory HPV typing analysis workflows

    R 5 4

  4. GEMSCAN GEMSCAN Public

    Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

    Python 5 7

  5. QIIME_pipeline QIIME_pipeline Public

    CGR's QIIME microbiome pipeline

    Python 3 3

  6. plco-analysis plco-analysis Public

    Primary workflow for the PLCO "Atlas" project

    Shell 2 3

Repositories

Showing 10 of 60 repositories
  • TriosCompass_v2 Public

    Trios analysis workflow written in Snakemake

    NCI-CGR/TriosCompass_v2’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 11, 2024
  • GwasQcPipeline Public

    The CGR GWAS QC processing workflow.

    NCI-CGR/GwasQcPipeline’s past year of commit activity
    Python 0 MIT 2 14 0 Updated Jul 11, 2024
  • TypeSeq2 Public
    NCI-CGR/TypeSeq2’s past year of commit activity
    R 1 0 0 0 Updated Jun 12, 2024
  • PLP_prediction_workflow Public
    NCI-CGR/PLP_prediction_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 4, 2024
  • MineSV Public
    NCI-CGR/MineSV’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated May 30, 2024
  • gatk-sv Public Forked from broadinstitute/gatk-sv

    A structural variation pipeline for short-read sequencing - modified to run on HPC

    NCI-CGR/gatk-sv’s past year of commit activity
    Python 0 BSD-3-Clause 71 1 0 Updated May 28, 2024
  • GenCompass_WGS Public

    GenCompass: Germline Ensemble Calling of Mutations with Parabricks Accelerated Software Suite

    NCI-CGR/GenCompass_WGS’s past year of commit activity
    Python 0 0 0 0 Updated May 10, 2024
  • ExomeQcPipeline Public
    NCI-CGR/ExomeQcPipeline’s past year of commit activity
    Python 0 1 1 0 Updated May 4, 2024
  • GEMSCAN Public

    Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

    NCI-CGR/GEMSCAN’s past year of commit activity
    Python 5 MIT 7 15 0 Updated May 1, 2024
  • UKB_extract_variants Public

    Extract variants of interest from UKB Biobank data hosted at DNAnexus

    NCI-CGR/UKB_extract_variants’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Apr 30, 2024
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