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1. DISCOVER DISCOVER Public

   DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

   Fortran 27 6

2. flexgsea-r flexgsea-r Public

   Flexible gene set enrichment analysis

   R 10 2

3. cnr cnr Public

   A method for network reconstruction and quantification from perturbation experiments

   Python

4. TANDEM TANDEM Public

   A two-stage regression method that can be used when various input data types are correlated, for example gene expression and methylation in drug response prediction. In the first stage it uses the …

   R 4

5. won-parafac won-parafac Public

   Weighted orthogonal non-negative (WON) parallel factor analsyis (PARAFAC)

   MATLAB 1 2

6. sobolev_alignment sobolev_alignment Public

   Sobolev alignment of deep probabilistic models for comparing single cell profiles

   Python 5 2