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Version 19.10.1

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@stevekm stevekm released this 12 Oct 10:58
· 18 commits to master since this release
  • decrease default memory allocation to pack compute jobs tighter and increase pipeline throughput
  • better handling for SLURM queue JSON
  • remove all filters on variant output except PASS filters
  • clean up 'work' directory upon successful pipeline completion
  • add workflow completion status logging to make it easier to tell if workflow completed successfully
  • fix issue with LofreqSomatic not outputting indels
  • fix issue with masked nucleotides in variants breaking annotation merge script
  • add annotation table comparison reporting to compare the outputs of different pipeline runs