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@ObenaufLab

ObenaufLab

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  1. snv-calling-nf snv-calling-nf Public

    Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

    Nextflow 5 1

  2. virus-detection-nf virus-detection-nf Public

    Nextflow workflow for virus detection, integration site mapping and splice-variant detection.

    Python 4 1

  3. CaTCH CaTCH Public

    Analysis code for CaTCH barcoding experiments.

    Python 3

  4. sv-calling-nf sv-calling-nf Public

    Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.

    Nextflow 2

  5. Containers Containers Public

    Repository of Makefiles for Docker containers

    Dockerfile 1

  6. variant-circos-nf variant-circos-nf Public

    Nextflow workflow for circos visualizations of variant data.

    Nextflow

Repositories

Showing 8 of 8 repositories
  • CaTCH Public

    Analysis code for CaTCH barcoding experiments.

    ObenaufLab/CaTCH’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jul 27, 2022
  • virus-detection-nf Public

    Nextflow workflow for virus detection, integration site mapping and splice-variant detection.

    ObenaufLab/virus-detection-nf’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Jan 3, 2021
  • Containers Public

    Repository of Makefiles for Docker containers

    ObenaufLab/Containers’s past year of commit activity
    Dockerfile 1 AGPL-3.0 0 0 0 Updated Jun 17, 2020
  • snv-calling-nf Public

    Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

    ObenaufLab/snv-calling-nf’s past year of commit activity
    Nextflow 5 MIT 1 0 0 Updated Nov 22, 2018
  • sv-calling-nf Public

    Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.

    ObenaufLab/sv-calling-nf’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated May 22, 2018
  • wgs-alignment-nf Public

    Nextflow workflow for BWA alignment of WGS

    ObenaufLab/wgs-alignment-nf’s past year of commit activity
    0 MIT 0 0 0 Updated May 17, 2018
  • battenberg-nf Public

    Nextflow workflow for Battenberg to detect subclonality and copy number in matched NGS data

    ObenaufLab/battenberg-nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated May 17, 2018
  • variant-circos-nf Public

    Nextflow workflow for circos visualizations of variant data.

    ObenaufLab/variant-circos-nf’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated May 16, 2018

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