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@PGScatalog

The Polygenic Score (PGS) Catalog

Code repository for the Polygenic Score (PGS) Catalog, an open database of PGS and the relevant metadata needed to apply and evaluate them correctly

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  1. pgsc_calc pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    Nextflow 104 18

  2. pgscatalog_utils pgscatalog_utils Public

    (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

    Python 5 3

  3. PGS_Catalog PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    Python 9 5

  4. pgs-harmonizer pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    Python 4 2

Repositories

Showing 10 of 10 repositories
  • pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    PGScatalog/pgsc_calc’s past year of commit activity
    Nextflow 104 Apache-2.0 18 17 0 Updated Jul 4, 2024
  • fraposa_pgsc Public Forked from daviddaiweizhang/fraposa

    Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)

    PGScatalog/fraposa_pgsc’s past year of commit activity
    Python 3 3 4 1 Updated Jul 1, 2024
  • PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    PGScatalog/PGS_Catalog’s past year of commit activity
    Python 9 Apache-2.0 5 15 5 Updated Jun 28, 2024
  • pygscatalog Public

    Python applications and libraries for working with PGS data and the PGS Catalog

    PGScatalog/pygscatalog’s past year of commit activity
    Python 3 Apache-2.0 0 4 0 Updated Jun 25, 2024
  • pgscatalog_utils Public

    (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

    PGScatalog/pgscatalog_utils’s past year of commit activity
    Python 5 Apache-2.0 3 7 0 Updated Jun 25, 2024
  • pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    PGScatalog/pgs-harmonizer’s past year of commit activity
    Python 4 Apache-2.0 2 5 (1 issue needs help) 2 Updated May 21, 2024
  • pgs_template_validator Public

    Standalone Python validator for the PGS Catalog Curation Template (Metadata)

    PGScatalog/pgs_template_validator’s past year of commit activity
    Python 0 Apache-2.0 2 0 0 Updated Dec 19, 2023
  • pgs_metadata_exports Public

    Package to export PGS Catalog metadata

    PGScatalog/pgs_metadata_exports’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Nov 16, 2023
  • pgs_variants_coords Public

    Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs

    PGScatalog/pgs_variants_coords’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Nov 1, 2023
  • pgs_scoringfile_validator Public archive Forked from EBISPOT/sum-stats-formatter

    Formatting and validating scripts for Polygenic Scoring files

    PGScatalog/pgs_scoringfile_validator’s past year of commit activity
    Python 0 4 0 0 Updated Jun 8, 2022

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