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@QI2lab

QI2 lab

Quantitative Imaging and Inference Lab

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  1. mcSIM mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    Python 50 11

  2. OPM OPM Public

    Control, reconstruction, and analysis code for oblique plane microscopy.

    Python 21 7

  3. localize-psf localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    Python 5 1

  4. merfish3d-analysis merfish3d-analysis Public

    3D MERFISH data processing

    Python

  5. I2K2022-SIM I2K2022-SIM Public

    I2K 2022 mcSIM tutorial

    Jupyter Notebook 5

  6. napari-mcsim napari-mcsim Public

    Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package

    Python 1

Repositories

Showing 10 of 23 repositories
  • SPIM_model Public
    QI2lab/SPIM_model’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jul 17, 2024
  • merfish3d-analysis Public

    3D MERFISH data processing

    QI2lab/merfish3d-analysis’s past year of commit activity
    Python 0 BSD-3-Clause 0 11 0 Updated Jul 16, 2024
  • sparse-deconv-py Public Forked from WeisongZhao/sparse-deconv-py

    Official Python implementation of the 'Sparse deconvolution'-v0.3.0

    QI2lab/sparse-deconv-py’s past year of commit activity
    Python 1 ODbL-1.0 17 0 0 Updated Jul 16, 2024
  • napari-micromanager Public Forked from pymmcore-plus/napari-micromanager
    QI2lab/napari-micromanager’s past year of commit activity
    Python 0 BSD-3-Clause 21 0 0 Updated Jul 10, 2024
  • ray_trace_pb Public

    Simple ray tracing in Python

    QI2lab/ray_trace_pb’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 9, 2024
  • mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    QI2lab/mcSIM’s past year of commit activity
    Python 50 GPL-3.0 11 0 0 Updated Jul 3, 2024
  • localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    QI2lab/localize-psf’s past year of commit activity
    Python 5 GPL-3.0 1 0 0 Updated Jul 3, 2024
  • navigate Public Forked from TheDeanLab/navigate

    navigate - open source light-sheet microscope controls

    QI2lab/navigate’s past year of commit activity
    Python 0 5 0 0 Updated May 24, 2024
  • U-FISH Public Forked from UFISH-Team/U-FISH

    Deep learning based spot detection for FISH images.

    QI2lab/U-FISH’s past year of commit activity
    Jupyter Notebook 1 MIT 5 0 0 Updated Apr 7, 2024
  • spots3d Public

    GPU accelerated spot finding and localization for both skewed (diSPIM, lattice, OPM) and standard geometry (widefield, confocal) 3D microscopy data.

    QI2lab/spots3d’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 30, 2024
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