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Release 1.5 #112

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@AntonPetrov AntonPetrov commented Oct 4, 2023 •
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Docker image tag(s) pushed:

rnacentral/r2dt:pr-112

Labels added to images:

org.opencontainers.image.created=2023-10-19T09:14:44.755Z
org.opencontainers.image.description=Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
org.opencontainers.image.licenses=Apache-2.0
org.opencontainers.image.revision=6267a7901a53b3fc3cf86ff1767c104799db381e
org.opencontainers.image.source=https://github.com/RNAcentral/R2DT
org.opencontainers.image.title=R2DT
org.opencontainers.image.url=https://github.com/RNAcentral/R2DT
org.opencontainers.image.version=pr-112

anayden
anayden reviewed Oct 8, 2023
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anayden
anayden reviewed Oct 8, 2023
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anayden
anayden reviewed Oct 8, 2023
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AntonPetrov and others added 9 commits October 13, 2023 13:31
@AntonPetrov @anayden
Fix file extension
4fe80b6
@AntonPetrov @anayden
Prevent crashes if CM does not exist
d661ffe
@AntonPetrov @anayden
Fix tRNAscan model path
d437ae9
@AntonPetrov @anayden
Handle NNN anticodon for mito-vert tRNAs
dfc7793
@AntonPetrov @anayden
Clean up .ssi files after tests
ca24928 
This prevents errors if sequences are added to existing fasta files.
@AntonPetrov @anayden
Add tag to justfile
0d0baef
@AntonPetrov @anayden
Avoid spawning a new process and use python api
e351aa3
@AntonPetrov @anayden
Improve based on code review
a57f5bd
@dependabot @anayden
Bump pillow from 10.0.0 to 10.0.1
336f56d 
Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.0.0 to 10.0.1.
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@10.0.0...10.0.1)

---
updated-dependencies:
- dependency-name: pillow
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@AntonPetrov AntonPetrov changed the title Post-release bug fixes Release 1.5 Dec 8, 2023
@AntonPetrov AntonPetrov marked this pull request as draft December 8, 2023 10:28
@AntonPetrov
Switch to http instead of ftp
29690f6
@AntonPetrov
Update Rfam id list for release 14.10
3bb2e01
@AntonPetrov
Update R-scape to latest version
0b06293
@AntonPetrov
Update clean up script to remove helixcov files
2bf7792
@AntonPetrov
Update Rfam files for release 14.10
2fb3d3f
@AntonPetrov
Do not generate thumbnails for enriched SVGs
00366bf
@AntonPetrov
Move rfam setup code out of r2dt.py
f61940c
@AntonPetrov
Install RNArtist
12d1421
@AntonPetrov
Update R-scape to stop R2R issues
34fb0b4
@AntonPetrov
Ignore lancaster annotations and 5' labels
6841bcb
@AntonPetrov
Minor improvements
ead54ff
@AntonPetrov
Use cm suffix
567dfad
@AntonPetrov
Update regex to account for characters in 5' label
b9ac688
@AntonPetrov
Switch to new method of managing Rfam seeds
d44631c 
Fix #124
@AntonPetrov
Delete temporary r2r_meta files
f0f5ccf
@AntonPetrov
Update Rfam templates to release 14.10
5cc4ba4 
Also delete templates without consensus secondary structure
@AntonPetrov
Fix broken test
03b8089
@AntonPetrov
Replace / in seq_id with underscore
40fedc4
@AntonPetrov
Fix font size in enriched diagrams too
87f6c88
@AntonPetrov
Fix conflict
f9ac97f
@AntonPetrov
Merge pull request #132 from RNAcentral/rfam-updates
f38cdd6 
Rfam updates
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Bundle Rfam seeds into cms tarball? Possible off-by-one error?
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@AntonPetrov @anayden