Releases · Sage-Bionetworks-Workflows/nextflow-infra

First initial tagged release

What's Changed

Add draft CI workflow by @BrunoGrandePhD in #1
Create S3 bucket for storing CloudFormation templates by @BrunoGrandePhD in #2
Add NextFlow service account policy and user by @tthyer in #4
Create initial draft for contribution guidelines by @BrunoGrandePhD in #3
Add launch policy for NextFlow service user by @tthyer in #6
CICD refactor by @tthyer in #7
Revert "CICD refactor" by @tthyer in #8
Revert "Revert "CICD refactor"" by @tthyer in #9
Fix CICD refactor issues by @tthyer in #10
Add VPCs by @tthyer in #11
IT-1223: Add routes to VPN and update Sceptre action by @xschildw in #14
Provision service user for accessing S3 data by @BrunoGrandePhD in #12
Add an AWS Aurora cluster required for NextFlow Tower app by @tthyer in #15
Add lambda to bootstrap tower database by @tthyer in #16
Use -O option for storing wget output to avoid caching by @BrunoGrandePhD in #17
WORKFLOWS-25: support sceptre resolvers in build by @tthyer in #19
WORKFLOWS-21: Add ECS cluster stack by @tthyer in #18
Add KMS keys for workflows-specific infrastructure by @tthyer in #22
Update Nextflow IAM Forge Policy by @daisyhan97 in #24
WORKFLOWS-17: Enable Aurora DB logging via CloudWatch by @BrunoGrandePhD in #21
Add stack that produces SMTP credentials by @tthyer in #35
IT-1373: Add hosted zones by @xschildw in #38
WORKFLOWS-36 use custom keys by @tthyer in #37
Workflows-22 ECS task definition by @tthyer in #39
Remove VPC peering by @tthyer in #40
KMS key for bootstrapping must be in same stack with Lambda by @tthyer in #41
Add ACM certificates for subdomains by @tthyer in #42
Update VPC template version to the v0.3.0 tag by @tthyer in #43
Update prod config for nextflow-aurora-mysql template changes by @tthyer in #44
WORKFLOWS-20: Custom S3 Bucket Template by @daisyhan97 in #36
Nextflow ECS Service and ALB by @tthyer in #48
Happiness is a private subnet by @tthyer in #49
System to mount Nextflow Tower configuration by @tthyer in #51
[WORKFLOWS-43] Create comprehensive stack for compute environments by @BrunoGrandePhD in #50
[WORKFLOWS-34] Onboarding Documentation by @BrunoGrandePhD in #52
[WORKFLOWS-44] Add Managed Scaling by @tthyer in #53
[WORKFLOWS-38] Encrypt EFS file system by @tthyer in #55
[WORKFLOWS-44] Enable metrics collection for autoscaling group by @tthyer in #56
Restrict KMS key access to project-specific roles and admins by @BrunoGrandePhD in #54
[WORKFLOWS-51] Switch from GitHub to Google for IdP by @BrunoGrandePhD in #57
add in challenge project by @thomasyu888 in #58
[WORKFLOWS-42] Send tower container logs to Cloudwatch by @BrunoGrandePhD in #60
[WORKFLOW-42] TESTING by @thomasyu888 in #63
[WORKFLOWS-39] Parametrize IAM resources rather than hard-coding by @BrunoGrandePhD in #59
[WORKFLOWS-52] Create post-launch hook script for Tower projects by @BrunoGrandePhD in #62
[WORKFLOWS-60] Integrate configure-tower-project.py into CI by @BrunoGrandePhD in #64
[WORKFLOWS-15/34] Create README with onboarding docs by @BrunoGrandePhD in #46
Create jhu-biobank-nf Tower project by @BrunoGrandePhD in #61
Create imcore Tower project by @BrunoGrandePhD in #66
[WORKFLOWS-65] Create VPC gateway endpoints for S3 by @BrunoGrandePhD in #67
Prevent public IPs being assigned to private EC2s by @BrunoGrandePhD in #68
Require inbound ECS traffic to originate from VPC by @BrunoGrandePhD in #69
add amp-ad project by @wpoehlm in #71
[WORKFLOWS-67] Create more granular budget alerts by @BrunoGrandePhD in #73
[WORKFLOWS-70] Create public buckets for iGenomes reference files by @BrunoGrandePhD in #74
Add HTAN project by @adamjtaylor in #75
[WORKFLOWS-66] Allow S3 object indexing by Synapse by @BrunoGrandePhD in #76
[WORKFLOWS-68] Use Sceptre template handlers for remote templates by @BrunoGrandePhD in #72
Migrate important info to Confluence wiki page with watchers by @BrunoGrandePhD in #78
[WORKFLOWS-62 | WORKFLOWS-76] Add CostCenter tags by @BrunoGrandePhD in #77
Ensure that iGenomes reference files are public by @BrunoGrandePhD in #81
[WORKFLOWS-55 | WORKFLOWS-96] Upgrade Nextflow Tower to v21.06.4 by @BrunoGrandePhD in #80
[WORKFLOWS-84] Provide default GitHub credentials by @BrunoGrandePhD in #83
[WORKFLOWS-99] Switch to BucketOwnerEnforced object ownership setting by @BrunoGrandePhD in #82
Bump s3 permission by @thomasyu888 in #86
Create INCLUDE Tower project by @BrunoGrandePhD in #87
[WORKFLOWS-85] Prototype Tower project in separate account by @BrunoGrandePhD in #84
Fix dependency paths after re-organizing configs by @BrunoGrandePhD in #88
Create the production AMP-AD Tower project in the STRIDES AWS account by @BrunoGrandePhD in #89
Minor docs changes by @allaway in #90
Create cNF cell line processing Tower project by @allaway in #91
[WORKFLOWS-93] Create Tower project for project GENIE by @BrunoGrandePhD in #92
Fix CostCenter tags values based on latest list by @BrunoGrandePhD in #93
Create ucf-dod-nf2-project.yaml by @allaway in #94
[WOR...