Merge pull request #5 from avanlinden/ad-config-updates

update amp-ad config options

inst/config.yml

@@ -43,7 +43,7 @@ dev:
 
 amp-ad:
   app_url: "https://shinypro.synapse.org/users/awilliams/dccmonitor/"
-  annotations_link: "https://shinypro.synapse.org/users/nkauer/amp-ad-metadata-dictionary/"
+  annotations_link: "https://www.synapse.org/#!Synapse:syn25878249"
   consortium_fileview: "syn21448475"
   samples_table: "syn21578908"
   annotations_storage: "syn21698384"
@@ -78,6 +78,7 @@ amp-ad:
       ATACseq: "syn22024364"
       autorad: "syn22087295"
       immunoassay: "syn22117582"
+      rnaSeq: "syn12973256"
       proteomics: "syn12973255"
       single cell RNAseq: "syn21018360"
       wholeGenomeSeq: "syn21018358"
@@ -101,11 +102,17 @@ amp-ad:
       - "grant"
       - "fileFormat"
       - "parent"
+      - "path"
     individual:
       - "individualID"
+      - "species"
+      - "sex"
     biospecimen:
       - "individualID"
       - "specimenID"
+      - "organ"
+      - "tissue"
+      - "assay"
     assay:
       - "specimenID"