Bump synapseclient from 2.3.1 to 2.5.1 in /conda/sage-bionetworks

[dependabot]

Bumps synapseclient from 2.3.1 to 2.5.1.

Release notes

Sourced from synapseclient's releases.

v2.5.1

Bug Fixes

• [SYNPY-1197] - Schema is a string and strings don't have columns_to_store attributes

Stories

• [SYNPY-772] - update statement that appears on PyPi about Synapse to be consistent
• [SYNPY-997] - Typos in Views documentation

Contributors: @​thomasyu888, @​danlu1

New Contributors

• @​danlu1 made their first contribution in Sage-Bionetworks/synapsePythonClient#892

GitHub Changelog: Sage-Bionetworks/synapsePythonClient@v2.5.0...v2.5.1

v2.5.0

Highlights

• Added ability to generate a manifest file from your local directory structure.

  # from the command line
  # write the manifest to manifest.tsv
  synapse manifest --parent-id syn123 --manifest-file ./manifest.tsv /path/to/local/directory
  # stdout
  synapse manifest --parent-id syn123 /path/to/local/directory
  

• Added ability to pipe manifest stdout into sync function.

  # from the command line
  synapse manifest --parent-id syn123 ./docs/ | synapse sync -
  

• Added ability to return summary statistics of csv and tsv files stored in Synapse.

  # from python
  import synapseclient
  import synapseutils
  syn = synapseclient.login()
  statistics = synapseutils.describe(syn=syn, entity="syn12345")
  print(statistics)
  {
      "column1": {
          "dtype": "object",
          "mode": "FOOBAR"
      },
      "column2": {
  

... (truncated)

Changelog

Sourced from synapseclient's changelog.

2.5.1 (2021-12-02)

Highlights

• Next major release (3.0.0) there will be major cosmetic changes to the cli such as removing all camel case or non-standard single dash long command line interface (cli) parameters. Example: command line arguments like -parent will become --parent. Commands that support camel case like --parentId will be changed to --parent-id.

Bug Fixes

• [SYNPY-1197 <https://sagebionetworks.jira.com/browse/SYNPY-1197>__] - Schema is a string and strings don't have columns_to_store attributes

Stories

• [SYNPY-772 <https://sagebionetworks.jira.com/browse/SYNPY-772>__] - update statement that appears on PyPi about Synapse to be consistent
• [SYNPY-997 <https://sagebionetworks.jira.com/browse/SYNPY-997>__] - Typos in Views documentation

2.5.0 (2021-10-05)

Highlights

• Added ability to generate a manifest file from your local directory structure.

  .. code-block:: bash

    # from the command line
    # write the manifest to manifest.tsv
    synapse manifest --parent-id syn123 --manifest-file ./manifest.tsv /path/to/local/directory
    # stdout
    synapse manifest --parent-id syn123 /path/to/local/directory
  

• Added ability to pipe manifest stdout into sync function.

  .. code-block:: bash

    # from the command line
    synapse manifest --parent-id syn123 ./docs/ | synapse sync -
  

• Added ability to return summary statistics of csv and tsv files stored in Synapse.

... (truncated)

Commits

• fe9a3c2 version v2.5.1 docs
• e7192f2 Update version
• 89b57b4 Use double quote
• fceac63 escape quote
• 953d0b0 Fix workflow
• 5ff0b60 Use latest python
• 36f5566 Revert
• e73b502 Use latest python release
• c2defac Merge pull request #891 from thomasyu888/fix-schema-issue
• 59e61fd Update documentation
• Additional commits viewable in compare view

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