South Green Bioinformatics platform
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- Montpellier
- http://www.southgreen.fr/
- @green_bioinfo
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Repositories
- AgroLD_ETL Public
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
SouthGreenPlatform/AgroLD_ETL’s past year of commit activity - AgroLD_webapp Public
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
SouthGreenPlatform/AgroLD_webapp’s past year of commit activity - training_SV_teaching Public
Training Detection of SNP and Structural Variants using short and long reads
SouthGreenPlatform/training_SV_teaching’s past year of commit activity - PanExplorer_workflow Public
Snakemake worklow for bacterial pan-genome analysis. It can be run in the back-end of PanExplorer web application
SouthGreenPlatform/PanExplorer_workflow’s past year of commit activity - documentation Public
Documentation related to the SouthGreen Platform - https://southgreenplatform.github.io/documentation/
SouthGreenPlatform/documentation’s past year of commit activity - VcfHunter Public
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
SouthGreenPlatform/VcfHunter’s past year of commit activity - Galaxy-docker-rnaseq Public
SouthGreenPlatform/Galaxy-docker-rnaseq’s past year of commit activity