Update Pfam.sh

SystemsGenetics · May 16, 2019 · 4fc0908 · 4fc0908
1 parent 9434934
commit 4fc0908
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/terms/Pfam.sh b/terms/Pfam.sh
@@ -1,7 +1,6 @@
-wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/pfamA.txt.gz
+wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/pfamA.txt.gz
 gunzip pfamA.txt.gz
-cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$4}' > Pfam.terms.txt
+cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$2"\t"$5}' > Pfam.terms.txt
 wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/dead_family.txt.gz
 gunzip dead_family.txt.gz
 cat dead_family.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$2" (deprecated): "$3}' > Pfam.deprecated-terms.txt
-