TarViz

Visualization dashboard for TarGene results

Requirements

Conda environment with poetry

Development from Eddie

In order to forward and display the the app in the browser (workaround taken from the jupyther notebook config):

1. Create a SSH tunnel from your local machine:

ssh -fNL 8501:localhost:8501 <Eddie node>

or

ssh -fN <UUN>@<Eddie_node> -J <UUN>@eddie.ecdf.ed.ac.uk -L 8501:localhost:8501

where <Eddie_node> is the node where the app will be running and is described in the ssh config file.

2. Run the app:

poetry run streamlit run 0_🌶_Home.py --server.port=8501 NEXTFLOW_RUNDIR <folder_to_GTEX/bulk-qtl_v8_multi-tissue-qtl_GTEx_Analysis_v8.hdf5>

where NEXTFLOW_RUNDIR is the TarGene pipeline's run directory.