Update automated_tests.yml to use setup-java@v4 #60
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Automated tests | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'zulu' # See 'Supported distributions' for available options | |
| java-version: '8' | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| channels: defaults,conda-forge,bioconda | |
| - name: Install dependencies | |
| run: | | |
| apt-get update && apt-get --assume-yes install wget make procps software-properties-common | |
| wget -qO- https://get.nextflow.io | bash && cp nextflow /usr/local/bin/nextflow | |
| - name: Cache conda environments | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| /home/runner/work/tronflow-mutect2/tronflow-mutect2/work/conda | |
| key: ${{ runner.os }}-tronflow-mutect2 | |
| - name: Run tests | |
| run: | | |
| make |