PON script update #12
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* Required as nextflow version was built against a non-canonical more recent java version
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Update PON best practice Nextflow pipeline according to the GATK documentation:
Please note that the new best practice workflow according to the GATK documentation (see also here) now uses GenomicsDB for scalability. Therefore, we included a new step for
GenomicsDBImportin our pipeline. To improve the performance of this step, we applied the recommendations according to GATK's GenomicsDBImport usage and performance guidelines.