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@Xinglab

Xinglab

Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania

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  1. rmats-turbo rmats-turbo Public

    C++ 209 48

  2. rmats2sashimiplot rmats2sashimiplot Public

    Python 125 53

  3. DARTS DARTS Public

    Deep-learning Augmented RNA-seq analysis of Transcript Splicing

    Python 106 30

  4. espresso espresso Public

    Python 48 4

  5. lr2rmats lr2rmats Public

    Long read to rMATS

    C 27 6

  6. CLAM CLAM Public

    CLIP-seq Analysis of Multi-mapped reads

    Python 26 6

Repositories

Showing 10 of 32 repositories
  • rmats-turbo Public
    Xinglab/rmats-turbo’s past year of commit activity
    C++ 209 48 159 3 Updated Jul 3, 2024
  • TideHunter Public

    TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

    Xinglab/TideHunter’s past year of commit activity
    C 18 MIT 2 7 0 Updated Jun 17, 2024
  • rMATS-long Public
    Xinglab/rMATS-long’s past year of commit activity
    Python 19 2 3 0 Updated Jun 14, 2024
  • rmats2sashimiplot Public
    Xinglab/rmats2sashimiplot’s past year of commit activity
    Python 125 GPL-2.0 53 23 0 Updated Apr 8, 2024
  • IRIS Public

    IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

    Xinglab/IRIS’s past year of commit activity
    Python 22 8 6 0 Updated Feb 8, 2024
  • DARTS Public

    Deep-learning Augmented RNA-seq analysis of Transcript Splicing

    Xinglab/DARTS’s past year of commit activity
    Python 106 30 16 0 Updated Feb 7, 2024
  • isoCirc Public

    isoCirc

    Xinglab/isoCirc’s past year of commit activity
    Python 10 GPL-3.0 4 4 0 Updated Nov 27, 2023
  • espresso Public
    Xinglab/espresso’s past year of commit activity
    Python 48 4 18 0 Updated Oct 19, 2023
  • TEQUILA-seq Public

    The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

    Xinglab/TEQUILA-seq’s past year of commit activity
    Python 8 0 1 0 Updated Sep 5, 2023
  • abPOA Public

    abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

    Xinglab/abPOA’s past year of commit activity
    C 12 MIT 3 0 0 Updated Jul 20, 2023
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