2_Figure_generation.sh

python scripts/Figure_generation.py \
--isoform_proportion_inf BRCA_Example/samples_N2_R0_abundance_CPM_ESPRESSO_proportion.txt \
--isoform_cpm_inf BRCA_Example/samples_N2_R0_abundance_CPM_ESPRESSO.txt \
--group_info_inf BRCA_Example/group_info.txt \
--required_trans_inf BRCA_Example/required_trans.txt \
--bedgraph BRCA_Example/samples_BedGraph.bed \
--genome_version hg19 \
--figures Isoform Single_isoform Structure \
--order yes \
--outf_dir BRCA_Example