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Can rmats analyze alternative first exon? #368

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xsong8823 opened this issue Feb 23, 2024 · 1 comment
Open

Can rmats analyze alternative first exon? #368

xsong8823 opened this issue Feb 23, 2024 · 1 comment

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@xsong8823
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Hi, I'm trying to analyze alternative first exon (alternative transcription start site) between two groups of samples. I'm wondering if rMATS could do such analysis. Thanks!
@EricKutschera
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rMATS does not detect alternative first exon events. Here's a related post: https://groups.google.com/g/rmats-user-group/c/pJC_TN97VcQ

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@EricKutschera @xsong8823