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Issues: aertslab/pySCENIC

Possible solutions for GRNBoost2/GENIE3 Dask issues
#163 opened May 1, 2020 by cflerin
Open 2
pySCENIC for other species
#172 by singcell was closed Apr 11, 2022
Closed 3
Aggregating results across pySCENIC runs
#169 by diegoalexespi was closed Feb 18, 2021
Closed 6
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Issues list

[BUG] run in pyscenic grn bug Something isn't working
#559 opened Jul 2, 2024 by zhangdong360
2
[ERROR] in running Pyscenic GRN grnboost2 bug Something isn't working
#557 opened Jun 24, 2024 by husain223
1
[BUG]concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruy while the future was running or pending. bug Something isn't working
#556 opened Jun 24, 2024 by YOUWEIQINGHUAN
1
ctx pyscenic Error bug Something isn't working
#555 opened Jun 16, 2024 by angelica-varesi
1
TypeError("Must supply at least one delayed object") bug Something isn't working
#554 opened Jun 16, 2024 by lpalvin
1
Expression matrix should be provided in the loom file format.[BUG] bug Something isn't working
#553 opened Jun 13, 2024 by bitcometz
1
[BUG] Encoding Argument While Loading Pickle File Produces Error in pyscenic aucell bug Something isn't working
#552 opened Jun 11, 2024 by ggruenhagen3
prune2df fails with TypeError: object of type 'generator' has no len() [BUG] bug Something isn't working
#551 opened Jun 7, 2024 by dmalzl
2
[question] Can use xgboost or lightgbm question Further information is requested
#550 opened Jun 2, 2024 by Liripo
Numba: Attempted to fork from a non-main thread, the TBB library may be in an invalid state in the child process. bug Something isn't working
#549 opened Jun 2, 2024 by xiaodiYan
1
Can pySCENIC only run on Linux? Is it possible to use it on Windows? bug Something isn't working
#546 opened May 19, 2024 by Always-Stude
2
[results]There is no X_pca? obsm: 'X_umap', 'X_tsne' question Further information is requested
#545 opened May 11, 2024 by yllahmu
1
[results] different input files or loom versions having different auccell loom results question Further information is requested
#544 opened May 11, 2024 by lexuziandyu
1
[BUG] AttributeError: module 'numpy' has no attribute 'float'. bug Something isn't working
#543 opened May 3, 2024 by juniajvs
5
[question] hg19 tf list bug Something isn't working
#541 opened Apr 22, 2024 by colin893
1
[BUG] the binary binary_mtx, auc_thresholds = binarize(auc_mtx, num_workers = 15) get error bug Something isn't working
#540 opened Apr 19, 2024 by honghh2018
1
Is pyscenic grn proceeding? It does not throw any responses. question Further information is requested
#538 opened Apr 12, 2024 by hansong798
4
[results]Transcription factor activity from AUCell result question Further information is requested
#537 opened Apr 9, 2024 by QianLLLL
Why does the same transcription factor have many regulons? question Further information is requested
#535 opened Mar 22, 2024 by M-jk22
4
[BUG] Less than 80% of the genes [...] warning with cisTarget step + Pruning gets rid of many regulons bug Something isn't working
#534 opened Mar 21, 2024 by VincentGardeux
3
/usr/bin/sh: 1: pyscenic: not found [BUG] bug Something isn't working
#532 opened Mar 14, 2024 by RolantusdataExp
3
[BUG] pySCENIC installation error bug Something isn't working
#531 opened Mar 6, 2024 by strawberry098
1
[BUG] early termination of pyscenic ctx with no error message bug Something isn't working
#528 opened Feb 9, 2024 by Mira0507
3
[BUG]Expression matrix should be provided in the loom file format/The loom doesn't contain regulon information bug Something isn't working
#527 opened Jan 30, 2024 by HaixJiang
7
Error running GRNBoost2 step
#525 opened Jan 18, 2024 by eblchen
17
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