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update README to reflect last PR #4

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update README to reflect last PR #4

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11 changes: 6 additions & 5 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -34,16 +34,17 @@ To replicate any of our outcome prediction results, you only need to run the out

```
python run_outcome_prediction.py
--train <PATH_TO_TRAIN_CSV>
--dev <PATH_TO_DEV_CSV>
--test <PATH_TO_TEST_CSV>
--init_model <HF_IDENTIFIER>
--train_path <PATH_TO_TRAIN_CSV>
--dev_path <PATH_TO_DEV_CSV>
--test_path <PATH_TO_TEST_CSV>
--init_model <HF_IDENTIFIER or PATH_TO_LOCAL_MODEL>
--out_dir <PATH_TO_OUTPUT_DIR>
--checkpoint <PATH_TO_TRAINED_MODEL>
--outcome <pmv/los/mortality>
--do_test
--strategy <average/softvote/weightvote/weightaverage>
--lit_dir <PATH_TO_RERANKER_OUTPUT>
--lit_ranks <PATH_TO_RERANKER_OUTPUT>
--lit_file <PATH_TO_LITERATURE_PICKLE>
--num_top_docs <K_VALUE>
```

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