Tabulators in BED files are crucial

apeltzer · Jul 19, 2016 · 8b41040 · 8b41040
1 parent 6973630
commit 8b41040
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/docs/contents/tutorials.rst b/docs/contents/tutorials.rst
@@ -20,7 +20,7 @@ Ideally, your folder structure should look like:
    :width: 300px
    :height: 300px
    :align: center
-
+BED
 .. warning::
   If you need to perform genotyping, please ensure that your genome FastA file is ending with a `.fasta` file extension, or otherwise the GATK might complain about this.
 
@@ -62,7 +62,7 @@ In our case here, we choose that our data has not been treated with UDG, we have
 
 .. note::
 
-  You have to specify a **BED** file for your reference genome if you want to analyse capture data in general. A typical BED file that could be used e.g. for HG19 mitochondrial analysis could look like this.
+  You have to specify a **BED** file for your reference genome if you want to analyse capture data in general. A typical BED file that could be used e.g. for HG19 mitochondrial analysis could look like this. Make sure to have tabulators between the six columns in your BED file.
 
   .. code-block:: bash
 
@@ -459,4 +459,4 @@ EAGER creates a CSV based report file in the results folder, which contains stat
 
 All the output BAM files, VCF files and other important analysis results can be found in the sample specific folders in the results folder.
 
-.. note:: You can import the results table in CSV format in any compatible sheet calculation software, LibreOffice for example works very well.
+.. note:: You can import the results table in CSV format in any compatible sheet calculation software, LibreOffice for example works very well.