Skip to content
@bailey-lab

Bailey Lab

Studying the genetics and genomics of infectious disease and immunity

Pinned Loading

  1. MIPTools MIPTools Public

    A suite of computational tools used for molecular inversion probe design, data processing, and analysis.

    Jupyter Notebook 6 9

  2. miplicorn miplicorn Public

    A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.

    R 3 2

  3. SeekDeep SeekDeep Public

    Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

    C++ 13 5

  4. MIPWrangler MIPWrangler Public

    Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results

    C++ 1 1

  5. coiaf coiaf Public

    Complexity of Infection Estimation with Allele Frequencies

    R 3 2

  6. coiaf-real-data coiaf-real-data Public

    MalariaGEN Plasmodium falciparum Community Project analysis using coiaf

    HTML 6 1

Repositories

Showing 10 of 44 repositories
  • MIPTools Public

    A suite of computational tools used for molecular inversion probe design, data processing, and analysis.

    bailey-lab/MIPTools’s past year of commit activity
    Jupyter Notebook 6 MIT 9 12 2 Updated Jul 3, 2024
  • SeekDeep Public

    Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

    bailey-lab/SeekDeep’s past year of commit activity
    C++ 13 LGPL-3.0 5 7 0 Updated Jul 2, 2024
  • bailey-lab/Po_popgen_snakemake’s past year of commit activity
    Python 0 0 0 0 Updated Jun 14, 2024
  • seekdeep_nanopore_snakemake Public

    a basic workflow for running seekdeep on nanopore

    bailey-lab/seekdeep_nanopore_snakemake’s past year of commit activity
    Python 1 0 1 0 Updated Jun 11, 2024
  • selmar Public

    Analysis of selection coefficients for antimalarial resistance

    bailey-lab/selmar’s past year of commit activity
    R 0 0 0 0 Updated Jun 7, 2024
  • coatswga Public
    bailey-lab/coatswga’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 7, 2024
  • seekdeep_analysis_snakemake Public

    Analyzes seekdeep data for read counts of individual samples

    bailey-lab/seekdeep_analysis_snakemake’s past year of commit activity
    Python 1 0 0 0 Updated May 9, 2024
  • bailey-lab/BL-Survival-Prediction-and-Prognostic-Subgrouping’s past year of commit activity
    Shell 0 0 0 0 Updated May 2, 2024
  • seekdeep_illumina_snakemake Public

    a basic workflow for running seekdeep pipelines in snakemake

    bailey-lab/seekdeep_illumina_snakemake’s past year of commit activity
    Python 1 0 1 0 Updated Apr 29, 2024
  • EBV-SWGA Public
    bailey-lab/EBV-SWGA’s past year of commit activity
    Python 0 0 0 0 Updated Apr 28, 2024

Top languages

Loading…

Most used topics

Loading…